AI Chatbot Interface

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  • Domain adaptation

    Domain adaptation

    Domain adaptation is a field associated with machine learning and transfer learning. It addresses the challenge of training a model on one data distribution (the source domain) and applying it to a related but different data distribution (the target domain). A common example is spam filtering, where a model trained on emails from one user (source domain) is adapted to handle emails for another user with significantly different patterns (target domain). Domain adaptation techniques can also leverage unrelated data sources to improve learning. When multiple source distributions are involved, the problem extends to multi-source domain adaptation. Domain adaptation is a specific type of transfer learning. According to the taxonomy laid out by Pan and Yang (2010), it falls into the category of transductive transfer learning. In this setting, the source and target tasks are the same (e.g., both are object recognition), but the domains differ (different marginal distributions). This distinguishes it from inductive transfer learning (where labeled data is available for the target task) and unsupervised transfer learning (where labels are unavailable in both domains). == Classification of domain adaptation problems == Domain adaptation setups are classified in two different ways: according to the distribution shift between the domains, and according to the available data from the target domain. === Distribution shifts === Common distribution shifts are classified as follows: Covariate Shift occurs when the input distributions of the source and destination change, but the relationship between inputs and labels remains unchanged. The above-mentioned spam filtering example typically falls in this category. Namely, the distributions (patterns) of emails may differ between the domains, but emails labeled as spam in the one domain should similarly be labeled in another. Prior Shift (Label Shift) occurs when the label distribution differs between the source and target datasets, while the conditional distribution of features given labels remains the same. An example is a classifier of hair color in images from Italy (source domain) and Norway (target domain). The proportions of hair colors (labels) differ, but images within classes like blond and black-haired populations remain consistent across domains. A classifier for the Norway population can exploit this prior knowledge of class proportions to improve its estimates. Concept Shift (Conditional Shift) refers to changes in the relationship between features and labels, even if the input distribution remains the same. For instance, in medical diagnosis, the same symptoms (inputs) may indicate entirely different diseases (labels) in different populations (domains). === Data available during training === Domain adaptation problems typically assume that some data from the target domain is available during training. Problems can be classified according to the type of this available data: Unsupervised: Unlabeled data from the target domain is available, but no labeled data. In the above-mentioned example of spam filtering, this corresponds to the case where emails from the target domain (user) are available, but they are not labeled as spam. Domain adaptation methods can benefit from such unlabeled data, by comparing its distribution (patterns) with the labeled source domain data. Semi-supervised: Most data that is available from the target domain is unlabelled, but some labeled data is also available. In the above-mentioned case of spam filter design, this corresponds to the case that the target user has labeled some emails as being spam or not. Supervised: All data that is available from the target domain is labeled. In this case, domain adaptation reduces to refinement of the source domain predictor. In the above-mentioned example classification of hair-color from images, this could correspond to the refinement of a network already trained on a large dataset of labeled images from Italy, using newly available labeled images from Norway. == Formalization == Let X {\displaystyle X} be the input space (or description space) and let Y {\displaystyle Y} be the output space (or label space). The objective of a machine learning algorithm is to learn a mathematical model (a hypothesis) h : X → Y {\displaystyle h:X\to Y} able to attach a label from Y {\displaystyle Y} to an example from X {\displaystyle X} . This model is learned from a learning sample S = { ( x i , y i ) ∈ ( X × Y ) } i = 1 m {\displaystyle S=\{(x_{i},y_{i})\in (X\times Y)\}_{i=1}^{m}} . Usually in supervised learning (without domain adaptation), we suppose that the examples ( x i , y i ) ∈ S {\displaystyle (x_{i},y_{i})\in S} are drawn i.i.d. from a distribution D S {\displaystyle D_{S}} of support X × Y {\displaystyle X\times Y} (unknown and fixed). The objective is then to learn h {\displaystyle h} (from S {\displaystyle S} ) such that it commits the least error possible for labelling new examples coming from the distribution D S {\displaystyle D_{S}} . The main difference between supervised learning and domain adaptation is that in the latter situation we study two different (but related) distributions D S {\displaystyle D_{S}} and D T {\displaystyle D_{T}} on X × Y {\displaystyle X\times Y} . The domain adaptation task then consists of the transfer of knowledge from the source domain D S {\displaystyle D_{S}} to the target one D T {\displaystyle D_{T}} . The goal is then to learn h {\displaystyle h} (from labeled or unlabelled samples coming from the two domains) such that it commits as little error as possible on the target domain D T {\displaystyle D_{T}} . The major issue is the following: if a model is learned from a source domain, what is its capacity to correctly label data coming from the target domain? == Four algorithmic principles == === Reweighting algorithms === The objective is to reweight the source labeled sample such that it "looks like" the target sample (in terms of the error measure considered). === Iterative algorithms === A method for adapting consists in iteratively "auto-labeling" the target examples. The principle is simple: a model h {\displaystyle h} is learned from the labeled examples; h {\displaystyle h} automatically labels some target examples; a new model is learned from the new labeled examples. Note that there exist other iterative approaches, but they usually need target labeled examples. === Search of a common representation space === The goal is to find or construct a common representation space for the two domains. The objective is to obtain a space in which the domains are close to each other while keeping good performances on the source labeling task. This can be achieved through the use of Adversarial machine learning techniques where feature representations from samples in different domains are encouraged to be indistinguishable. === Hierarchical Bayesian Model === The goal is to construct a Bayesian hierarchical model p ( n ) {\displaystyle p(n)} , which is essentially a factorization model for counts n {\displaystyle n} , to derive domain-dependent latent representations allowing both domain-specific and globally shared latent factors. == Software packages == Several compilations of domain adaptation and transfer learning algorithms have been implemented over the past decades: SKADA (Python) ADAPT (Python) TLlib (Python) Domain-Adaptation-Toolbox (MATLAB)

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  • Unrestricted algorithm

    Unrestricted algorithm

    An unrestricted algorithm is an algorithm for the computation of a mathematical function that puts no restrictions on the range of the argument or on the precision that may be demanded in the result. The idea of such an algorithm was put forward by C. W. Clenshaw and F. W. J. Olver in a paper published in 1980. In the problem of developing algorithms for computing, as regards the values of a real-valued function of a real variable (e.g., g[x] in "restricted" algorithms), the error that can be tolerated in the result is specified in advance. An interval on the real line would also be specified for values when the values of a function are to be evaluated. Different algorithms may have to be applied for evaluating functions outside the interval. An unrestricted algorithm envisages a situation in which a user may stipulate the value of x and also the precision required in g(x) quite arbitrarily. The algorithm should then produce an acceptable result without failure.

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  • Data management plan

    Data management plan

    A data management plan or DMP is a formal document that outlines how data are to be handled both during a research project, and after the project is completed. The goal of a data management plan is to consider the many aspects of data management, metadata generation, data preservation, and analysis before the project begins; this may lead to data being well-managed in the present, and prepared for preservation in the future. DMPs were originally used in 1966 to manage aeronautical and engineering projects' data collection and analysis, and expanded across engineering and scientific disciplines in the 1970s and 1980s. Up until the early 2000s, DMPs were used "for projects of great technical complexity, and for limited mid-study data collection and processing purposes". In the 2000s and later, E-research and economic policies drove the development and uptake of DMPs. == Importance == Preparing a data management plan before data are collected is claimed to ensure that data are in the correct format, organized well, and better annotated. This could arguably save time in the long term because there is no need to re-organize, re-format, or try to remember details about data. It is also claimed to increase research efficiency since both the data collector and other researchers might be able to understand and use well-annotated data in the future. One component of a data management plan is data archiving and preservation. By deciding on an archive ahead of time, the data collector can format data during collection to make its future submission to a database easier. If data are preserved, they are more relevant since they can be re-used by other researchers. It also allows the data collector to direct requests for data to the database, rather than address requests individually. A frequent argument in favor of preservation is that data that are preserved have the potential to lead to new, unanticipated discoveries, and they prevent duplication of scientific studies that have already been conducted. Data archiving also provides insurance against loss by the data collector. In the 2010s, funding agencies increasingly required data management plans as part of the proposal and evaluation process, despite little or no evidence of their efficacy. == Major components == "There is no general and definitive list of topics that should be covered in a DMP for a research project", and researchers are often left to their own devices as to how to fill out a DMP. === Information about data and data format === A description of data to be produced by the project. This might include (but is not limited to) data that are: Experimental Observational Raw or derived Physical collections Models Simulations Curriculum materials Software Images How will the data be acquired? When and where will they be acquired? After collection, how will the data be processed? Include information about Software used Algorithms Scientific workflows File formats that will be used, justify those formats, and describe the naming conventions used. Quality assurance & quality control measures that will be taken during sample collection, analysis, and processing. If existing data are used, what are their origins? How will the data collected be combined with existing data? What is the relationship between the data collected and existing data? How will the data be managed in the short-term? Consider the following: Version control for files Backing up data and data products Security & protection of data and data products Who will be responsible for management === Metadata content and format === Metadata are the contextual details, including any information important for using data. This may include descriptions of temporal and spatial details, instruments, parameters, units, files, etc. Metadata is commonly referred to as "data about data". Issues to be considered include: How detailed has the metadata to be in order to make the data meaningful? How will the metadata be created and/or captured? Examples include lab notebooks, GPS hand-held units, Auto-saved files on instruments, etc. What format will be used for the metadata? What are the metadata standards commonly used in the respective scientific discipline? There should be justification for the format chosen. === Policies for access, sharing, and re-use === Describe any obligations that exist for sharing data collected. These may include obligations from funding agencies, institutions, other professional organizations, and legal requirements. Include information about how data will be shared, including when the data will be accessible, how long the data will be available, how access can be gained, and any rights that the data collector reserves for using data. Address any ethical or privacy issues with data sharing Address intellectual property & copyright issues. Who owns the copyright? What are the institutional, publisher, and/or funding agency policies associated with intellectual property? Are there embargoes for political, commercial, or patent reasons? Describe the intended future uses/users for the data Indicate how the data should be cited by others. How will the issue of persistent citation be addressed? For example, if the data will be deposited in a public archive, will the dataset have a persistent identifier (e.g., ARK, DOI, Handle, PURL, URN) assigned to it? === Long-term storage and data management === Researchers should identify an appropriate archive for the long-term preservation of their data. By identifying the archive early in the project, the data can be formatted, transformed, and documented appropriately to meet the requirements of the archive. Researchers should consult colleagues and professional societies in their discipline to determine the most appropriate database, and include a backup archive in their data management plan in case their first choice goes out of existence. Early in the project, the primary researcher should identify what data will be preserved in an archive. Usually, preserving the data in its most raw form is desirable, although data derivatives and products can also be preserved. An individual should be identified as the primary contact person for archived data, and ensure contact information is always kept up-to-date in case there are requests for data or information about data. === Budget === Data management and preservation costs may be considerable, depending on the nature of the project. By anticipating costs ahead of time, researchers ensure that the data will be properly managed and archived. Potential expenses that should be considered are Human resources and staff as they handle data preparation, management, documentation, and preservation Hardware and/or software needed for data management, backing up, security, documentation, and preservation Costs associated with submitting the data to an archive The data management plan should include how these costs will be paid. == NSF Data Management Plan == All grant proposals submitted to National Science Foundation (NSF) must include a Data Management Plan that is no more than two pages. This is a supplement (not part of the 15-page proposal) and should describe how the proposal will conform to the Award and Administration Guide policy (see below). It may include the following: The types of data The standards to be used for data and metadata format and content Policies for access and sharing Policies and provisions for re-use Plans for archiving data Policy summarized from the NSF Award and Administration Guide, Section 4 (Dissemination and Sharing of Research Results): Promptly publish with appropriate authorship Share data, samples, physical collections, and supporting materials with others, within a reasonable time frame Share software and inventions Investigators can keep their legal rights over their intellectual property, but they still have to make their results, data, and collections available to others Policies will be implemented via Proposal review Award negotiations and conditions Support/incentives == ESRC Data Management Plan == Since 1995, the UK's Economic and Social Research Council (ESRC) have had a research data policy in place. The current ESRC Research Data Policy states that research data created as a result of ESRC-funded research should be openly available to the scientific community to the maximum extent possible, through long-term preservation and high-quality data management. ESRC requires a data management plan for all research award applications where new data are being created. Such plans are designed to promote a structured approach to data management throughout the data lifecycle, resulting in better quality data that is ready to archive for sharing and re-use. The UK Data Service, the ESRC's flagship data service, provides practical guidance on research data management planning suitable for social science researchers in the UK and around the world. ESRC has a longstanding arrangement with the UK Data A

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  • Point-in-time recovery

    Point-in-time recovery

    Point-in-time recovery (PITR) in the context of computers involves systems, often databases, whereby an administrator can restore or recover a set of data or a particular setting from a time in the past. Note for example Windows's capability to restore operating-system settings from a past date (for instance, before data corruption occurred). Time Machine for macOS provides another example of point-in-time recovery. Once PITR logging starts for a PITR-capable database, a database administrator can restore that database from backups to the state that it had at any time since.

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  • Actor-critic algorithm

    Actor-critic algorithm

    The actor-critic algorithm (AC) is a family of reinforcement learning (RL) algorithms that combine policy-based RL algorithms such as policy gradient methods, and value-based RL algorithms such as value iteration, Q-learning, SARSA, and TD learning. An AC algorithm consists of two main components: an "actor" that determines which actions to take according to a policy function, and a "critic" that evaluates those actions according to a value function. Some AC algorithms are on-policy, some are off-policy. Some apply to either continuous or discrete action spaces. Some work in both cases. == Overview == The actor-critic methods can be understood as an improvement over pure policy gradient methods like REINFORCE via introducing a baseline. === Actor === The actor uses a policy function π ( a | s ) {\displaystyle \pi (a|s)} , while the critic estimates either the value function V ( s ) {\displaystyle V(s)} , the action-value Q-function Q ( s , a ) , {\displaystyle Q(s,a),} the advantage function A ( s , a ) {\displaystyle A(s,a)} , or any combination thereof. The actor is a parameterized function π θ {\displaystyle \pi _{\theta }} , where θ {\displaystyle \theta } are the parameters of the actor. The actor takes as argument the state of the environment s {\displaystyle s} and produces a probability distribution π θ ( ⋅ | s ) {\displaystyle \pi _{\theta }(\cdot |s)} . If the action space is discrete, then ∑ a π θ ( a | s ) = 1 {\displaystyle \sum _{a}\pi _{\theta }(a|s)=1} . If the action space is continuous, then ∫ a π θ ( a | s ) d a = 1 {\displaystyle \int _{a}\pi _{\theta }(a|s)da=1} . The goal of policy optimization is to improve the actor. That is, to find some θ {\displaystyle \theta } that maximizes the expected episodic reward J ( θ ) {\displaystyle J(\theta )} : J ( θ ) = E π θ [ ∑ t = 0 T γ t r t ] {\displaystyle J(\theta )=\mathbb {E} _{\pi _{\theta }}\left[\sum _{t=0}^{T}\gamma ^{t}r_{t}\right]} where γ {\displaystyle \gamma } is the discount factor, r t {\displaystyle r_{t}} is the reward at step t {\displaystyle t} , and T {\displaystyle T} is the time-horizon (which can be infinite). The goal of policy gradient method is to optimize J ( θ ) {\displaystyle J(\theta )} by gradient ascent on the policy gradient ∇ J ( θ ) {\displaystyle \nabla J(\theta )} . As detailed on the policy gradient method page, there are many unbiased estimators of the policy gradient: ∇ θ J ( θ ) = E π θ [ ∑ 0 ≤ j ≤ T ∇ θ ln ⁡ π θ ( A j | S j ) ⋅ Ψ j | S 0 = s 0 ] {\displaystyle \nabla _{\theta }J(\theta )=\mathbb {E} _{\pi _{\theta }}\left[\sum _{0\leq j\leq T}\nabla _{\theta }\ln \pi _{\theta }(A_{j}|S_{j})\cdot \Psi _{j}{\Big |}S_{0}=s_{0}\right]} where Ψ j {\textstyle \Psi _{j}} is a linear sum of the following: ∑ 0 ≤ i ≤ T ( γ i R i ) {\textstyle \sum _{0\leq i\leq T}(\gamma ^{i}R_{i})} . γ j ∑ j ≤ i ≤ T ( γ i − j R i ) {\textstyle \gamma ^{j}\sum _{j\leq i\leq T}(\gamma ^{i-j}R_{i})} : the REINFORCE algorithm. γ j ∑ j ≤ i ≤ T ( γ i − j R i ) − b ( S j ) {\textstyle \gamma ^{j}\sum _{j\leq i\leq T}(\gamma ^{i-j}R_{i})-b(S_{j})} : the REINFORCE with baseline algorithm. Here b {\displaystyle b} is an arbitrary function. γ j ( R j + γ V π θ ( S j + 1 ) − V π θ ( S j ) ) {\textstyle \gamma ^{j}\left(R_{j}+\gamma V^{\pi _{\theta }}(S_{j+1})-V^{\pi _{\theta }}(S_{j})\right)} : TD(1) learning. γ j Q π θ ( S j , A j ) {\textstyle \gamma ^{j}Q^{\pi _{\theta }}(S_{j},A_{j})} . γ j A π θ ( S j , A j ) {\textstyle \gamma ^{j}A^{\pi _{\theta }}(S_{j},A_{j})} : Advantage Actor-Critic (A2C). γ j ( R j + γ R j + 1 + γ 2 V π θ ( S j + 2 ) − V π θ ( S j ) ) {\textstyle \gamma ^{j}\left(R_{j}+\gamma R_{j+1}+\gamma ^{2}V^{\pi _{\theta }}(S_{j+2})-V^{\pi _{\theta }}(S_{j})\right)} : TD(2) learning. γ j ( ∑ k = 0 n − 1 γ k R j + k + γ n V π θ ( S j + n ) − V π θ ( S j ) ) {\textstyle \gamma ^{j}\left(\sum _{k=0}^{n-1}\gamma ^{k}R_{j+k}+\gamma ^{n}V^{\pi _{\theta }}(S_{j+n})-V^{\pi _{\theta }}(S_{j})\right)} : TD(n) learning. γ j ∑ n = 1 ∞ λ n − 1 1 − λ ⋅ ( ∑ k = 0 n − 1 γ k R j + k + γ n V π θ ( S j + n ) − V π θ ( S j ) ) {\textstyle \gamma ^{j}\sum _{n=1}^{\infty }{\frac {\lambda ^{n-1}}{1-\lambda }}\cdot \left(\sum _{k=0}^{n-1}\gamma ^{k}R_{j+k}+\gamma ^{n}V^{\pi _{\theta }}(S_{j+n})-V^{\pi _{\theta }}(S_{j})\right)} : TD(λ) learning, also known as GAE (generalized advantage estimate). This is obtained by an exponentially decaying sum of the TD(n) learning terms. === Critic === In the unbiased estimators given above, certain functions such as V π θ , Q π θ , A π θ {\displaystyle V^{\pi _{\theta }},Q^{\pi _{\theta }},A^{\pi _{\theta }}} appear. These are approximated by the critic. Since these functions all depend on the actor, the critic must learn alongside the actor. The critic is learned by value-based RL algorithms. For example, if the critic is estimating the state-value function V π θ ( s ) {\displaystyle V^{\pi _{\theta }}(s)} , then it can be learned by any value function approximation method. Let the critic be a function approximator V ϕ ( s ) {\displaystyle V_{\phi }(s)} with parameters ϕ {\displaystyle \phi } . The simplest example is TD(1) learning, which trains the critic to minimize the TD(1) error: δ i = R i + γ V ϕ ( S i + 1 ) − V ϕ ( S i ) {\displaystyle \delta _{i}=R_{i}+\gamma V_{\phi }(S_{i+1})-V_{\phi }(S_{i})} The critic parameters are updated by gradient descent on the squared TD error: ϕ ← ϕ − α ∇ ϕ ( δ i ) 2 = ϕ + α δ i ∇ ϕ V ϕ ( S i ) {\displaystyle \phi \leftarrow \phi -\alpha \nabla _{\phi }(\delta _{i})^{2}=\phi +\alpha \delta _{i}\nabla _{\phi }V_{\phi }(S_{i})} where α {\displaystyle \alpha } is the learning rate. Note that the gradient is taken with respect to the ϕ {\displaystyle \phi } in V ϕ ( S i ) {\displaystyle V_{\phi }(S_{i})} only, since the ϕ {\displaystyle \phi } in γ V ϕ ( S i + 1 ) {\displaystyle \gamma V_{\phi }(S_{i+1})} constitutes a moving target, and the gradient is not taken with respect to that. This is a common source of error in implementations that use automatic differentiation, and requires "stopping the gradient" at that point. Similarly, if the critic is estimating the action-value function Q π θ {\displaystyle Q^{\pi _{\theta }}} , then it can be learned by Q-learning or SARSA. In SARSA, the critic maintains an estimate of the Q-function, parameterized by ϕ {\displaystyle \phi } , denoted as Q ϕ ( s , a ) {\displaystyle Q_{\phi }(s,a)} . The temporal difference error is then calculated as δ i = R i + γ Q θ ( S i + 1 , A i + 1 ) − Q θ ( S i , A i ) {\displaystyle \delta _{i}=R_{i}+\gamma Q_{\theta }(S_{i+1},A_{i+1})-Q_{\theta }(S_{i},A_{i})} . The critic is then updated by θ ← θ + α δ i ∇ θ Q θ ( S i , A i ) {\displaystyle \theta \leftarrow \theta +\alpha \delta _{i}\nabla _{\theta }Q_{\theta }(S_{i},A_{i})} The advantage critic can be trained by training both a Q-function Q ϕ ( s , a ) {\displaystyle Q_{\phi }(s,a)} and a state-value function V ϕ ( s ) {\displaystyle V_{\phi }(s)} , then let A ϕ ( s , a ) = Q ϕ ( s , a ) − V ϕ ( s ) {\displaystyle A_{\phi }(s,a)=Q_{\phi }(s,a)-V_{\phi }(s)} . Although, it is more common to train just a state-value function V ϕ ( s ) {\displaystyle V_{\phi }(s)} , then estimate the advantage by A ϕ ( S i , A i ) ≈ ∑ j ∈ 0 : n − 1 γ j R i + j + γ n V ϕ ( S i + n ) − V ϕ ( S i ) {\displaystyle A_{\phi }(S_{i},A_{i})\approx \sum _{j\in 0:n-1}\gamma ^{j}R_{i+j}+\gamma ^{n}V_{\phi }(S_{i+n})-V_{\phi }(S_{i})} Here, n {\displaystyle n} is a positive integer. The higher n {\displaystyle n} is, the more lower is the bias in the advantage estimation, but at the price of higher variance. The Generalized Advantage Estimation (GAE) introduces a hyperparameter λ {\displaystyle \lambda } that smoothly interpolates between Monte Carlo returns ( λ = 1 {\displaystyle \lambda =1} , high variance, no bias) and 1-step TD learning ( λ = 0 {\displaystyle \lambda =0} , low variance, high bias). This hyperparameter can be adjusted to pick the optimal bias-variance trade-off in advantage estimation. It uses an exponentially decaying average of n-step returns with λ {\displaystyle \lambda } being the decay strength. == Variants == Asynchronous Advantage Actor-Critic (A3C): Parallel and asynchronous version of A2C. Soft Actor-Critic (SAC): Incorporates entropy maximization for improved exploration. Deep Deterministic Policy Gradient (DDPG): Specialized for continuous action spaces.

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  • Knowledge graph

    Knowledge graph

    In knowledge representation and reasoning, a knowledge graph is a knowledge base that uses a graph-structured data model or topology to represent and operate on data. Knowledge graphs are often used to store interlinked descriptions of entities – objects, events, situations or abstract concepts – while also encoding the free-form semantics or relationships underlying these entities. Since the development of the Semantic Web, knowledge graphs have often been associated with linked open data projects, focusing on the connections between concepts and entities. They are also historically associated with and used by search engines such as Google, Bing, and Yahoo; knowledge engines and question-answering services such as WolframAlpha, Apple's Siri, and Amazon Alexa; and social networks such as LinkedIn and Facebook. Recent developments in data science and machine learning, particularly in graph neural networks, representation learning, and machine learning, have broadened the scope of knowledge graphs beyond their traditional use in search engines and recommender systems. They are increasingly used in scientific research, with notable applications in fields such as genomics, proteomics, and systems biology. == History == The term was coined as early as 1972 by the Austrian linguist Edgar W. Schneider, in a discussion of how to build modular instructional systems for courses. In the late 1980s, the University of Groningen and University of Twente jointly began a project called Knowledge Graphs, focusing on the design of semantic networks with edges restricted to a limited set of relations, to facilitate algebras on the graph. In subsequent decades, the distinction between semantic networks and knowledge graphs was blurred. Some early knowledge graphs were topic-specific. In 1985, Wordnet was founded, capturing semantic relationships between words and meanings – an application of this idea to language itself. In 2005, Marc Wirk founded Geonames to capture relationships between different geographic names and locales and associated entities. In 1998, Andrew Edmonds of Science in Finance Ltd in the UK created a system called ThinkBase that offered fuzzy-logic based reasoning in a graphical context. In 2007, both DBpedia and Freebase were founded as graph-based knowledge repositories for general-purpose knowledge. DBpedia focused exclusively on data extracted from Wikipedia, while Freebase also included a range of public datasets. Neither described themselves as a 'knowledge graph' but developed and described related concepts. In 2012, Google introduced their Knowledge Graph, building on DBpedia and Freebase among other sources. They later incorporated RDFa, Microdata, JSON-LD content extracted from indexed web pages, including the CIA World Factbook, Wikidata, and Wikipedia. Entity and relationship types associated with this knowledge graph have been further organized using terms from the schema.org vocabulary. The Google Knowledge Graph became a complement to string-based search within Google, and its popularity online brought the term into more common use. Since then, several large multinationals have advertised their use of knowledge graphs, further popularising the term. These include Facebook, LinkedIn, Airbnb, Microsoft, Amazon, Uber and eBay. In 2019, IEEE combined its annual international conferences on "Big Knowledge" and "Data Mining and Intelligent Computing" into the International Conference on Knowledge Graph. The development of large language models expanded interest in knowledge graphs as a way to structure information from unstructured text, with advances in language processing enabling their automatic or semi-automatic generation and expansion. The term knowledge graph has since broadened to include the dynamically constructed and adaptive graph structures, which support retrieval, reasoning, and summarization in generative systems. Microsoft Research's GraphRAG (2024) exemplified this development by integrating LLM-generated graphs into retrieval-augmented generation. == Definitions == There is no single commonly accepted definition of a knowledge graph. Most definitions view the topic through a Semantic Web lens and include these features: Flexible relations among knowledge in topical domains: A knowledge graph (i) defines abstract classes and relations of entities in a schema, (ii) mainly describes real world entities and their interrelations, organized in a graph, (iii) allows for potentially interrelating arbitrary entities with each other, and (iv) covers various topical domains. General structure: A network of entities, their semantic types, properties, and relationships. To represent properties, categorical or numerical values are often used. Supporting reasoning over inferred ontologies: A knowledge graph acquires and integrates information into an ontology and applies a reasoner to derive new knowledge. There are, however, many knowledge graph representations for which some of these features are not relevant. For those knowledge graphs, this simpler definition may be more useful: A digital structure that represents knowledge as concepts and the relationships between them (facts). A knowledge graph can include an ontology that allows both humans and machines to understand and reason about its contents. === Implementations === In addition to the above examples, the term has been used to describe open knowledge projects such as YAGO and Wikidata; federations like the Linked Open Data cloud; a range of commercial search tools, including Yahoo's semantic search assistant Spark, Google's Knowledge Graph, and Microsoft's Satori; and the LinkedIn and Facebook entity graphs. The term is also used in the context of note-taking software applications that allow a user to build a personal knowledge graph. The popularization of knowledge graphs and their accompanying methods have led to the development of graph databases such as Neo4j, GraphDB and AgensGraph. These graph databases allow users to easily store data as entities and their interrelationships, and facilitate operations such as data reasoning, node embedding, and ontology development on knowledge bases. In contrast, virtual knowledge graphs do not store information in specialized databases. They rely on an underlying relational database or data lake to answer queries on the graph. Such a virtual knowledge graph system must be properly configured in order to answer the queries correctly. This specific configuration is done through a set of mappings that define the relationship between the elements of the data source and the structure and ontology of the virtual knowledge graph. == Using a knowledge graph for reasoning over data == A knowledge graph formally represents semantics by describing entities and their relationships. Knowledge graphs may make use of ontologies as a schema layer. By doing this, they allow logical inference for retrieving implicit knowledge rather than only allowing queries requesting explicit knowledge. In order to allow the use of knowledge graphs in various machine learning tasks, several methods for deriving latent feature representations of entities and relations have been devised. These knowledge graph embeddings allow them to be connected to machine learning methods that require feature vectors like word embeddings. This can complement other estimates of conceptual similarity. Models for generating useful knowledge graph embeddings are commonly the domain of graph neural networks (GNNs). GNNs are deep learning architectures that comprise edges and nodes, which correspond well to the entities and relationships of knowledge graphs. The topology and data structures afforded by GNNs provide a convenient domain for semi-supervised learning, wherein the network is trained to predict the value of a node embedding (provided a group of adjacent nodes and their edges) or edge (provided a pair of nodes). These tasks serve as fundamental abstractions for more complex tasks such as knowledge graph reasoning and alignment. === Entity alignment === As new knowledge graphs are produced across a variety of fields and contexts, the same entity will inevitably be represented in multiple graphs. However, because no single standard for the construction or representation of knowledge graph exists, resolving which entities from disparate graphs correspond to the same real world subject is a non-trivial task. This task is known as knowledge graph entity alignment, and is an active area of research. Strategies for entity alignment generally seek to identify similar substructures, semantic relationships, shared attributes, or combinations of all three between two distinct knowledge graphs. Entity alignment methods use these structural similarities between generally non-isomorphic graphs to predict which nodes correspond to the same entity. In 2023, researchers found success in using large language models (LLMs) in the task of entity alignment. This was in particul

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  • Mathematical knowledge management

    Mathematical knowledge management

    Mathematical knowledge management (MKM) is the study of how society can effectively make use of the vast and growing literature on mathematics. It studies approaches such as databases of mathematical knowledge, automated processing of formulae and the use of semantic information, and artificial intelligence. Mathematics is particularly suited to a systematic study of automated knowledge processing due to the high degree of interconnectedness between different areas of mathematics.

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  • Vinberg's algorithm

    Vinberg's algorithm

    In mathematics, Vinberg's algorithm is an algorithm, introduced by Ernest Borisovich Vinberg, for finding a fundamental domain of a hyperbolic reflection group. Conway (1983) used Vinberg's algorithm to describe the automorphism group of the 26-dimensional even unimodular Lorentzian lattice II25,1 in terms of the Leech lattice. == Description of the algorithm == Let Γ < I s o m ( H n ) {\displaystyle \Gamma <\mathrm {Isom} (\mathbb {H} ^{n})} be a hyperbolic reflection group. Choose any point v 0 ∈ H n {\displaystyle v_{0}\in \mathbb {H} ^{n}} ; we shall call it the basic (or initial) point. The fundamental domain P 0 {\displaystyle P_{0}} of its stabilizer Γ v 0 {\displaystyle \Gamma _{v_{0}}} is a polyhedral cone in H n {\displaystyle \mathbb {H} ^{n}} . Let H 1 , . . . , H m {\displaystyle H_{1},...,H_{m}} be the faces of this cone, and let a 1 , . . . , a m {\displaystyle a_{1},...,a_{m}} be outer normal vectors to it. Consider the half-spaces H k − = { x ∈ R n , 1 | ( x , a k ) ≤ 0 } . {\displaystyle H_{k}^{-}=\{x\in \mathbb {R} ^{n,1}|(x,a_{k})\leq 0\}.} There exists a unique fundamental polyhedron P {\displaystyle P} of Γ {\displaystyle \Gamma } contained in P 0 {\displaystyle P_{0}} and containing the point v 0 {\displaystyle v_{0}} . Its faces containing v 0 {\displaystyle v_{0}} are formed by faces H 1 , . . . , H m {\displaystyle H_{1},...,H_{m}} of the cone P 0 {\displaystyle P_{0}} . The other faces H m + 1 , . . . {\displaystyle H_{m+1},...} and the corresponding outward normals a m + 1 , . . . {\displaystyle a_{m+1},...} are constructed by induction. Namely, for H j {\displaystyle H_{j}} we take a mirror such that the root a j {\displaystyle a_{j}} orthogonal to it satisfies the conditions (1) ( v 0 , a j ) < 0 {\displaystyle (v_{0},a_{j})<0} ; (2) ( a i , a j ) ≤ 0 {\displaystyle (a_{i},a_{j})\leq 0} for all i < j {\displaystyle i Read more →

  • Business Controls Corporation

    Business Controls Corporation

    Business Controls Corporation is a privately held computer company that developed an application-program-generator and also a series of accounting software packages. These packages were widely enough used for various business magazines to have back-of-the-book ads for companies seeking accountants with experience in one or more of them. Computer magazines ran coverage for their SB-5 application-program-generator as from time to time new versions were released, each with new or improved features. == Early days == The company's initial offerings were packages for the DEC PDP-8, although Business Controls Corporation also wrote custom-written programs for customers. Large customers with mainframes who also used smaller systems for departmental use and distributed processing also used BCC's services. == SB-5 == The addition of an application-program-generator named SB-5 that, from specifications, could generate COBOL code was a major step forward. Although this began with supporting the DEC PDP-11, they subsequently began to support COBOL on DEC's DECsystem-10 & DECSYSTEM-20. VAX support came later. The specifications also permitted COBOL inserts and overrides: SB-5 could build an application that was all COBOL, yet only code the portions that varied from BCC's "vanilla" accounting packages. === Similar offerings === A similar idea was done for the IBM mainframe world in the form of a series of application-program-generators from Dylakor Corporation. They were named DYL-250, DYL-260, DYL-270 & DYL-280. Dylakor was acquired by Computer Associates. The specific syntax was different, but it had wider use, and - a mark of success and recognition in the industry - syntax-compatible implementations were released by a competitor. Still another alternative was Peat Marwick Mitchell's PMM2170 application-program-generator package. Like the others, it supported COBOL inserts and overrides. === Extended integration === Business Controls Corporation subsequently extended SB-5's feature set to provide support for System 1022, a product for the DECsystem-10 & DECSYSTEM-20; 1022's vendor also had a VAX/VMS (later OpenVMS) product, System 1032.

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  • Knuth–Eve algorithm

    Knuth–Eve algorithm

    In computer science, the Knuth–Eve algorithm is an algorithm for polynomial evaluation. It preprocesses the coefficients of the polynomial to reduce the number of multiplications required at runtime. Ideas used in the algorithm were originally proposed by Donald Knuth in 1962. His procedure opportunistically exploits structure in the polynomial being evaluated. In 1964, James Eve determined for which polynomials this structure exists, and gave a simple method of "preconditioning" polynomials (explained below) to endow them with that structure. == Algorithm == === Preliminaries === Consider an arbitrary polynomial p ∈ R [ x ] {\displaystyle p\in \mathbb {R} [x]} of degree n {\displaystyle n} . Assume that n ≥ 3 {\displaystyle n\geq 3} . Define m {\displaystyle m} such that: if n {\displaystyle n} is odd then n = 2 m + 1 {\displaystyle n=2m+1} , and if n {\displaystyle n} is even then n = 2 m + 2 {\displaystyle n=2m+2} . Unless otherwise stated, all variables in this article represent either real numbers or univariate polynomials with real coefficients. All operations in this article are done over R {\displaystyle \mathbb {R} } . Again, the goal is to create an algorithm that returns p ( x ) {\displaystyle p(x)} given any x {\displaystyle x} . The algorithm is allowed to depend on the polynomial p {\displaystyle p} itself, since its coefficients are known in advance. === Overview === ==== Key idea ==== Using polynomial long division, we can write p ( x ) = q ( x ) ⋅ ( x 2 − α ) + ( β x + γ ) , {\displaystyle p(x)=q(x)\cdot (x^{2}-\alpha )+(\beta x+\gamma ),} where x 2 − α {\displaystyle x^{2}-\alpha } is the divisor. Picking a value for α {\displaystyle \alpha } fixes both the quotient q {\displaystyle q} and the coefficients in the remainder β {\displaystyle \beta } and γ {\displaystyle \gamma } . The key idea is to cleverly choose α {\displaystyle \alpha } such that β = 0 {\displaystyle \beta =0} , so that p ( x ) = q ( x ) ⋅ ( x 2 − α ) + γ . {\displaystyle p(x)=q(x)\cdot (x^{2}-\alpha )+\gamma .} This way, no operations are needed to compute the remainder polynomial, since it's just a constant. We apply this procedure recursively to q {\displaystyle q} , expressing p ( x ) = ( ( q ( x ) ⋅ ( x 2 − α m ) + γ m ) ⋯ ) ⋅ ( x 2 − α 1 ) + γ 1 . {\displaystyle p(x)=\left(\left(q(x)\cdot (x^{2}-\alpha _{m})+\gamma _{m}\right)\cdots \right)\cdot (x^{2}-\alpha _{1})+\gamma _{1}.} After m {\displaystyle m} recursive calls, the quotient q {\displaystyle q} is either a linear or a quadratic polynomial. In this base case, the polynomial can be evaluated with (say) Horner's method. ==== "Preconditioning" ==== For arbitrary p {\displaystyle p} , it may not be possible to force β = 0 {\displaystyle \beta =0} at every step of the recursion. Consider the polynomials p e {\displaystyle p^{e}} and p o {\displaystyle p^{o}} with coefficients taken from the even and odd terms of p {\displaystyle p} respectively, so that p ( x ) = p e ( x 2 ) + x ⋅ p o ( x 2 ) . {\displaystyle p(x)=p^{e}(x^{2})+x\cdot p^{o}(x^{2}).} If every root of p o {\displaystyle p^{o}} is real, then it is possible to write p {\displaystyle p} in the form given above. Each α i {\displaystyle \alpha _{i}} is a different root of p o {\displaystyle p^{o}} , counting multiple roots as distinct. Furthermore, if at least n − 1 {\displaystyle n-1} roots of p {\displaystyle p} lie in one half of the complex plane, then every root of p o {\displaystyle p^{o}} is real. Ultimately, it may be necessary to "precondition" p {\displaystyle p} by shifting it — by setting p ( x ) ← p ( x + t ) {\displaystyle p(x)\gets p(x+t)} for some t {\displaystyle t} — to endow it with the structure that most of its roots lie in one half of the complex plane. At runtime, this shift has to be "undone" by first setting x ← x − t {\displaystyle x\gets x-t} . === Preprocessing step === The following algorithm is run once for a given polynomial p {\displaystyle p} . At this point, the values of x {\displaystyle x} that p {\displaystyle p} will be evaluated on are not known. ==== Better choice of t ==== While any t ≥ Re ( r 2 ) {\displaystyle t\geq {\text{Re}}(r_{2})} can work, it is possible to remove one addition during evaluation if t {\displaystyle t} is also chosen such that two roots of p ( x + t ) {\displaystyle p(x+t)} are symmetric about the origin. In that case, α 1 {\displaystyle \alpha _{1}} can be chosen such that the shifted polynomial has a factor of x 2 − α 1 {\displaystyle x^{2}-\alpha _{1}} , so γ 1 = 0 {\displaystyle \gamma _{1}=0} . It is always possible to find such a t {\displaystyle t} . One possible algorithm for choosing t {\displaystyle t} is: === Evaluation step === The following algorithm evaluates p {\displaystyle p} at some, now known, point x {\displaystyle x} . Assuming t {\displaystyle t} is chosen optimally, γ 1 = 0 {\displaystyle \gamma _{1}=0} . So, the final iteration of the loop can instead run y ← y ⋅ ( s − α i ) , {\displaystyle y\gets y\cdot (s-\alpha _{i}),} saving an addition. == Analysis == In total, evaluation using the Knuth–Eve algorithm for a polynomial of degree n {\displaystyle n} requires n {\displaystyle n} additions and ⌊ n / 2 ⌋ + 2 {\displaystyle \lfloor n/2\rfloor +2} multiplications, assuming t {\displaystyle t} is chosen optimally. No algorithm to evaluate a given polynomial of degree n {\displaystyle n} can use fewer than n {\displaystyle n} additions or fewer than ⌈ n / 2 ⌉ {\displaystyle \lceil n/2\rceil } multiplications during evaluation. This result assumes only addition and multiplication are allowed during both preprocessing and evaluation. The Knuth–Eve algorithm is not well-conditioned.

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  • Timeline of algorithms

    Timeline of algorithms

    The following timeline of algorithms outlines the development of algorithms (mainly "mathematical recipes") since their inception. == Antiquity == Before – writing about "recipes" (on cooking, rituals, agriculture and other themes) c. 1700–2000 BC – Egyptians develop earliest known algorithms for multiplying two numbers c. 1600 BC – Babylonians develop earliest known algorithms for factorization and finding square roots c. 300 BC – Euclid's algorithm c. 200 BC – the Sieve of Eratosthenes 263 AD – Gaussian elimination described by Liu Hui == Medieval Period == 628 – Chakravala method described by Brahmagupta c. 820 – Al-Khawarizmi described algorithms for solving linear equations and quadratic equations in his Algebra; the word algorithm comes from his name 825 – Al-Khawarizmi described the algorism, algorithms for using the Hindu–Arabic numeral system, in his treatise On the Calculation with Hindu Numerals, which was translated into Latin as Algoritmi de numero Indorum, where "Algoritmi", the translator's rendition of the author's name gave rise to the word algorithm (Latin algorithmus) with a meaning "calculation method" c. 850 – cryptanalysis and frequency analysis algorithms developed by Al-Kindi (Alkindus) in A Manuscript on Deciphering Cryptographic Messages, which contains algorithms on breaking encryptions and ciphers c. 1025 – Ibn al-Haytham (Alhazen), was the first mathematician to derive the formula for the sum of the fourth powers, and in turn, he develops an algorithm for determining the general formula for the sum of any integral powers c. 1400 – Ahmad al-Qalqashandi gives a list of ciphers in his Subh al-a'sha which include both substitution and transposition, and for the first time, a cipher with multiple substitutions for each plaintext letter; he also gives an exposition on and worked example of cryptanalysis, including the use of tables of letter frequencies and sets of letters which can not occur together in one word == Before 1940 == 1540 – Lodovico Ferrari discovered a method to find the roots of a quartic polynomial 1545 – Gerolamo Cardano published Cardano's method for finding the roots of a cubic polynomial 1614 – John Napier develops method for performing calculations using logarithms 1671 – Newton–Raphson method developed by Isaac Newton 1690 – Newton–Raphson method independently developed by Joseph Raphson 1706 – John Machin develops a quickly converging inverse-tangent series for π and computes π to 100 decimal places 1768 – Leonhard Euler publishes his method for numerical integration of ordinary differential equations in problem 85 of Institutiones calculi integralis 1789 – Jurij Vega improves Machin's formula and computes π to 140 decimal places, 1805 – FFT-like algorithm known by Carl Friedrich Gauss 1842 – Ada Lovelace writes the first algorithm for a computing engine 1903 – A fast Fourier transform algorithm presented by Carle David Tolmé Runge 1918 - Soundex 1926 – Borůvka's algorithm 1926 – Primary decomposition algorithm presented by Grete Hermann 1927 – Hartree–Fock method developed for simulating a quantum many-body system in a stationary state. 1934 – Delaunay triangulation developed by Boris Delaunay 1936 – Turing machine, an abstract machine developed by Alan Turing, with others developed the modern notion of algorithm. == 1940s == 1942 – A fast Fourier transform algorithm developed by G.C. Danielson and Cornelius Lanczos 1945 – Merge sort developed by John von Neumann 1947 – Simplex algorithm developed by George Dantzig == 1950s == 1950 – Hamming codes developed by Richard Hamming 1952 – Huffman coding developed by David A. Huffman 1953 – Simulated annealing introduced by Nicholas Metropolis 1954 – Radix sort computer algorithm developed by Harold H. Seward 1964 – Box–Muller transform for fast generation of normally distributed numbers published by George Edward Pelham Box and Mervin Edgar Muller. Independently pre-discovered by Raymond E. A. C. Paley and Norbert Wiener in 1934. 1956 – Kruskal's algorithm developed by Joseph Kruskal 1956 – Ford–Fulkerson algorithm developed and published by R. Ford Jr. and D. R. Fulkerson 1957 – Prim's algorithm developed by Robert Prim 1957 – Bellman–Ford algorithm developed by Richard E. Bellman and L. R. Ford, Jr. 1959 – Dijkstra's algorithm developed by Edsger Dijkstra 1959 – Shell sort developed by Donald L. Shell 1959 – De Casteljau's algorithm developed by Paul de Casteljau 1959 – QR factorization algorithm developed independently by John G.F. Francis and Vera Kublanovskaya 1959 – Rabin–Scott powerset construction for converting NFA into DFA published by Michael O. Rabin and Dana Scott == 1960s == 1960 – Karatsuba multiplication 1961 – CRC (Cyclic redundancy check) invented by W. Wesley Peterson 1962 – AVL trees 1962 – Quicksort developed by C. A. R. Hoare 1962 – Bresenham's line algorithm developed by Jack E. Bresenham 1962 – Gale–Shapley 'stable-marriage' algorithm developed by David Gale and Lloyd Shapley 1964 – Heapsort developed by J. W. J. Williams 1964 – multigrid methods first proposed by R. P. Fedorenko 1965 – Cooley–Tukey algorithm rediscovered by James Cooley and John Tukey 1965 – Levenshtein distance developed by Vladimir Levenshtein 1965 – Cocke–Younger–Kasami (CYK) algorithm independently developed by Tadao Kasami 1965 – Buchberger's algorithm for computing Gröbner bases developed by Bruno Buchberger 1965 – LR parsers invented by Donald Knuth 1966 – Dantzig algorithm for shortest path in a graph with negative edges 1967 – Viterbi algorithm proposed by Andrew Viterbi 1967 – Cocke–Younger–Kasami (CYK) algorithm independently developed by Daniel H. Younger 1968 – A graph search algorithm described by Peter Hart, Nils Nilsson, and Bertram Raphael 1968 – Risch algorithm for indefinite integration developed by Robert Henry Risch 1969 – Strassen algorithm for matrix multiplication developed by Volker Strassen == 1970s == 1970 – Dinic's algorithm for computing maximum flow in a flow network by Yefim (Chaim) A. Dinitz 1970 – Knuth–Bendix completion algorithm developed by Donald Knuth and Peter B. Bendix 1970 – BFGS method of the quasi-Newton class 1970 – Needleman–Wunsch algorithm published by Saul B. Needleman and Christian D. Wunsch 1972 – Edmonds–Karp algorithm published by Jack Edmonds and Richard Karp, essentially identical to Dinic's algorithm from 1970 1972 – Graham scan developed by Ronald Graham 1972 – Red–black trees and B-trees discovered 1973 – RSA encryption algorithm discovered by Clifford Cocks 1973 – Jarvis march algorithm developed by R. A. Jarvis 1973 – Hopcroft–Karp algorithm developed by John Hopcroft and Richard Karp 1974 – Pollard's p − 1 algorithm developed by John Pollard 1974 – Quadtree developed by Raphael Finkel and J.L. Bentley 1975 – Genetic algorithms popularized by John Holland 1975 – Pollard's rho algorithm developed by John Pollard 1975 – Aho–Corasick string matching algorithm developed by Alfred V. Aho and Margaret J. Corasick 1975 – Cylindrical algebraic decomposition developed by George E. Collins 1976 – Salamin–Brent algorithm independently discovered by Eugene Salamin and Richard Brent 1976 – Knuth–Morris–Pratt algorithm developed by Donald Knuth and Vaughan Pratt and independently by J. H. Morris 1977 – Boyer–Moore string-search algorithm for searching the occurrence of a string into another string. 1977 – RSA encryption algorithm rediscovered by Ron Rivest, Adi Shamir, and Len Adleman 1977 – LZ77 algorithm developed by Abraham Lempel and Jacob Ziv 1977 – multigrid methods developed independently by Achi Brandt and Wolfgang Hackbusch 1978 – LZ78 algorithm developed from LZ77 by Abraham Lempel and Jacob Ziv 1978 – Bruun's algorithm proposed for powers of two by Georg Bruun 1979 – Khachiyan's ellipsoid method developed by Leonid Khachiyan 1979 – ID3 decision tree algorithm developed by Ross Quinlan == 1980s == 1980 – Brent's Algorithm for cycle detection Richard P. Brendt 1981 – Quadratic sieve developed by Carl Pomerance 1981 – Smith–Waterman algorithm developed by Temple F. Smith and Michael S. Waterman 1983 – Simulated annealing developed by S. Kirkpatrick, C. D. Gelatt and M. P. Vecchi 1983 – Classification and regression tree (CART) algorithm developed by Leo Breiman, et al. 1984 – LZW algorithm developed from LZ78 by Terry Welch 1984 – Karmarkar's interior-point algorithm developed by Narendra Karmarkar 1984 – ACORN PRNG discovered by Roy Wikramaratna and used privately 1985 – Simulated annealing independently developed by V. Cerny 1985 – Car–Parrinello molecular dynamics developed by Roberto Car and Michele Parrinello 1985 – Splay trees discovered by Sleator and Tarjan 1986 – Blum Blum Shub proposed by L. Blum, M. Blum, and M. Shub 1986 – Push relabel maximum flow algorithm by Andrew Goldberg and Robert Tarjan 1986 – Barnes–Hut tree method developed by Josh Barnes and Piet Hut for fast approximate simulation of n-body problems 1987 – Fast multipole method developed by Leslie Greengard and Vladimir

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  • Research data archiving

    Research data archiving

    Research data archiving is the long-term storage of scholarly research data, including the natural sciences, social sciences, and life sciences. The various academic journals have differing policies regarding how much of their data and methods researchers are required to store in a public archive, and what is actually archived varies widely between different disciplines. Similarly, the major grant-giving institutions have varying attitudes towards public archiving of data. In general, the tradition of science has been for publications to contain sufficient information to allow fellow researchers to replicate and therefore test the research. In recent years this approach has become increasingly strained as research in some areas depends on large datasets which cannot easily be replicated independently. Data archiving is more important in some fields than others. In a few fields, all of the data necessary to replicate the work is already available in the journal article. In drug development, a great deal of data is generated and must be archived so researchers can verify that the reports the drug companies publish accurately reflect the data. Often used interchangeably, Data preservation and data archiving are both about protecting data for the long term, but they serve different purposes. Data preservation focuses on preventing data from being lost, damaged, or destroyed by creating backups, storing data in secure locations, and ensuring it remains accessible when needed. Data archiving, on the other hand, involves moving data that is no longer actively used to a separate storage location for long-term keeping. Archived data is often combined and compressed, and while it can still be accessed, it is not intended for regular use or frequent updates. The requirement of data archiving is a recent development in the history of science. It was made possible by advances in information technology allowing large amounts of data to be stored and accessed from central locations. For example, the American Geophysical Union (AGU) adopted their first policy on data archiving in 1993, about three years after the beginning of the WWW. This policy mandates that datasets cited in AGU papers must be archived by a recognised data center; it permits the creation of "data papers"; and it establishes AGU's role in maintaining data archives. But it makes no requirements on paper authors to archive their data. Prior to organized data archiving, researchers wanting to evaluate or replicate a paper would have to request data and methods information from the author. The academic community expects authors to share supplemental data. This process was recognized as wasteful of time and energy and obtained mixed results. Information could become lost or corrupted over the years. In some cases, authors simply refuse to provide the information. The need for data archiving and due diligence is greatly increased when the research deals with health issues or public policy formation. == Selected policies by journals == === Biotropica === Biotropica requires, as a condition for publication, that the data supporting the results in the paper and metadata describing them must be archived in an appropriate public archive such as Dryad, Figshare, GenBank, TreeBASE, or NCBI. Authors may elect to make the data publicly available as soon as the article is published or, if the technology of the archive allows, embargo access to the data up to three years after article publication. A statement describing Data Availability will be included in the manuscript as described in the instructions to authors. Exceptions to the required archiving of data may be granted at the discretion of the Editor-in-Chief for studies that include sensitive information (e.g., the location of endangered species). Our Editorial explaining the motivation for this policy can be found here. A more comprehensive list of data repositories is available here. Promoting a culture of collaboration with researchers who collect and archive data: The data collected by tropical biologists are often long-term, complex, and expensive to collect. The Board of Editors of Biotropica strongly encourages authors who re-use data archives archived data sets to include as fully engaged collaborators the scientists who originally collected them. We feel this will greatly enhance the quality and impact of the resulting research by drawing on the data collector’s profound insights into the natural history of the study system, reducing the risk of errors in novel analyses, and stimulating the cross-disciplinary and cross-cultural collaboration and training for which the ATBC and Biotropica are widely recognized. NB: Biotropica is one of only two journals that pays the fees for authors depositing data at Dryad. === The American Naturalist === The American Naturalist requires authors to deposit the data associated with accepted papers in a public archive. For gene sequence data and phylogenetic trees, deposition in GenBank or TreeBASE, respectively, is required. There are many possible archives that may suit a particular data set, including the Dryad repository for ecological and evolutionary biology data. All accession numbers for GenBank, TreeBASE, and Dryad must be included in accepted manuscripts before they go to Production. If the data is deposited somewhere else, please provide a link. If the data is culled from published literature, please deposit the collated data in Dryad for the convenience of your readers. Any impediments to data sharing should be brought to the attention of the editors at the time of submission so that appropriate arrangements can be worked out. === Journal of Heredity === The primary data underlying the conclusions of an article are critical to the verifiability and transparency of the scientific enterprise, and should be preserved in usable form for decades in the future. For this reason, Journal of Heredity requires that newly reported nucleotide or amino acid sequences, and structural coordinates, be submitted to appropriate public databases (e.g., GenBank; the EMBL Nucleotide Sequence Database; DNA Database of Japan; the Protein Data Bank; and Swiss-Prot). Accession numbers must be included in the final version of the manuscript. For other forms of data (e.g., microsatellite genotypes, linkage maps, images), the Journal endorses the principles of the Joint Data Archiving Policy (JDAP) in encouraging all authors to archive primary datasets in an appropriate public archive, such as Dryad, TreeBASE, or the Knowledge Network for Biocomplexity. Authors are encouraged to make data publicly available at time of publication or, if the technology of the archive allows, opt to embargo access to the data for a period up to a year after publication. The American Genetic Association also recognizes the vast investment of individual researchers in generating and curating large datasets. Consequently, we recommend that this investment be respected in secondary analyses or meta-analyses in a gracious collaborative spirit. === Molecular Ecology === Molecular Ecology expects that data supporting the results in the paper should be archived in an appropriate public archive, such as GenBank, Gene Expression Omnibus, TreeBASE, Dryad, the Knowledge Network for Biocomplexity, your own institutional or funder repository, or as Supporting Information on the Molecular Ecology web site. Data are important products of the scientific enterprise, and they should be preserved and usable for decades in the future. Authors may elect to have the data publicly available at time of publication, or, if the technology of the archive allows, may opt to embargo access to the data for a period up to a year after publication. Exceptions may be granted at the discretion of the editor, especially for sensitive information such as human subject data or the location of endangered species. === Nature === Such material must be hosted on an accredited independent site (URL and accession numbers to be provided by the author), or sent to the Nature journal at submission, either uploaded via the journal's online submission service, or if the files are too large or in an unsuitable format for this purpose, on CD/DVD (five copies). Such material cannot solely be hosted on an author's personal or institutional web site. Nature requires the reviewer to determine if all of the supplementary data and methods have been archived. The policy advises reviewers to consider several questions, including: "Should the authors be asked to provide supplementary methods or data to accompany the paper online? (Such data might include source code for modelling studies, detailed experimental protocols or mathematical derivations.) === Science === Science supports the efforts of databases that aggregate published data for the use of the scientific community. Therefore, before publication, large data sets (including microarray data, protein or DNA sequences, and atomic c

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  • Imaging

    Imaging

    Imaging is the process of creating visual representations of objects, scenes, or phenomena. The term encompasses both the formation of images through physical processes and the technologies used to capture, store, process, and display them. While traditional imaging relies on visible light, modern imaging systems can visualize information across the electromagnetic spectrum and through other physical phenomena such as sound waves, magnetic fields, and particle emissions, enabling the visualization of subjects invisible to the human eye. Imaging science is the multidisciplinary field concerned with the theoretical foundations and practical applications of image creation and analysis. The field draws on physics, mathematics, electrical engineering, computer science, computer vision, and perceptual psychology to develop systems that generate, collect, duplicate, analyze, modify, and visualize images. == Principles == === The imaging chain === The imaging chain is a conceptual framework describing the interconnected components of any imaging system. Understanding each link in this chain allows engineers and scientists to optimize system performance for specific applications. The chain begins with the subject and its observable properties, typically energy that is emitted, reflected, or transmitted. A light source or other energy source may illuminate the subject to make these properties detectable. The capture device then collects this energy using appropriate sensors: optical systems for electromagnetic radiation, transducers for acoustic waves, or antenna arrays for radio frequencies. In digital systems, a processor converts the captured signals into a format suitable for rendering, applying algorithms for noise reduction, enhancement, or reconstruction. Finally, a display renders the processed information as a visible image on media such as paper, screens, or projection surfaces. Throughout this process, the characteristics of the human visual system inform design decisions, as the ultimate purpose of most imaging systems is to convey information to human observers. === Coherent and non-coherent imaging === Imaging systems are often classified by whether they use coherent or non-coherent illumination. Coherent imaging employs an active source that produces waves with a consistent phase relationship, as in radar, synthetic aperture radar, medical ultrasound, and optical coherence tomography. These systems can capture phase information in addition to amplitude, enabling techniques such as holography and interferometry. Non-coherent imaging systems, including conventional photography, fluorescence microscopy, and telescopes, rely on illumination sources where light waves have random phase relationships. == Methods and applications == Imaging methods span a wide range of physical principles, each suited to particular applications. Optical imaging encompasses photography, cinematography, microscopy, and telescopic observation. These methods capture electromagnetic radiation in or near the visible spectrum and form the basis of most consumer and scientific imaging. Extensions include thermography, which visualizes infrared radiation to reveal temperature distributions, and multispectral imaging, which captures data across multiple wavelength bands for applications in remote sensing and materials analysis. Medical imaging comprises techniques designed to visualize the interior of the human body for diagnostic and therapeutic purposes. Radiography and computed tomography use X-rays to image dense structures such as bone. Magnetic resonance imaging exploits nuclear magnetic properties to produce detailed soft-tissue images without ionizing radiation. Ultrasound imaging uses high-frequency sound waves and is particularly valuable for real-time imaging and fetal monitoring. Nuclear medicine techniques such as positron emission tomography track radioactive tracers to reveal metabolic activity. Emerging modalities include photoacoustic imaging, which combines optical and acoustic principles, and Magneto-acousto-electrical tomography, which maps electrical conductivity in biological tissues. Acoustic imaging uses sound waves to create images. Beyond medical ultrasound, applications include sonar for underwater navigation and mapping, seismic imaging for geological exploration, and industrial non-destructive testing. Radar and microwave imaging employ radio waves to detect and image objects. Synthetic aperture radar produces high-resolution images from aircraft or satellites regardless of weather or lighting conditions, making it essential for Earth observation and reconnaissance. Ground-penetrating radar images subsurface structures for archaeological and engineering applications. Electron and particle imaging use beams of electrons or other particles to achieve resolutions far beyond the diffraction limit of visible light. Electron microscopes can image individual atoms, enabling advances in materials science and structural biology. Chemical imaging combines spectroscopy with spatial imaging to map the chemical composition of samples, with applications in pharmaceutical development, food safety, and forensics. LIDAR (Light Detection and Ranging) measures distances using laser pulses to create three-dimensional representations of surfaces and objects, widely used in autonomous vehicles, topographic mapping, and forestry. Computational and digital imaging encompasses image processing, computer graphics, three-dimensional rendering, and digital image restoration. Computer vision applies algorithmic analysis to extract information from images automatically. == History == Photography and imaging have always been intertwined. When Joseph Nicéphore Niépce created the first permanent photograph using heliography in 1826, and Louis Daguerre refined the process into the daguerreotype a decade later, they weren't just inventing a new art form, they were laying the groundwork for an entire scientific discipline built on silver halide chemistry. For most of the nineteenth century, photography remained the province of specialists. That changed with George Eastman's Kodak camera, introduced in 1888 with the slogan "You press the button, we do the rest." Suddenly, anyone could take pictures. Around the same time, Wilhelm Röntgen stumbled onto X-rays in 1895, an accident that would spawn the entire field of medical imaging. World War II proved to be a turning point. Radar technology, developed frantically on both sides of the conflict, introduced concepts that engineers would later adapt for synthetic aperture radar and medical ultrasound. Then the charge-coupled device came: Willard Boyle and George E. Smith built the first one at Bell Labs in 1969, and within a few decades it had made film nearly obsolete. Magnetic resonance imaging arrived in the 1970s, offering doctors something X-rays never could, detailed views of soft tissue without any radiation. Digital cameras took over fast. By the 2000s, film was already in decline; by the 2010s, smartphones had put a surprisingly capable camera in nearly every pocket. Features that once required real skill, proper exposure, sharp focus, accurate color, became automatic. Today, billions of photos get uploaded to social media every day. As a result, a growing issue is that generative artificial intelligence can fabricate photorealistic images from scratch. What counts as a "real" photograph is no longer necessarily obvious.

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  • Bibliometrician

    Bibliometrician

    A bibliometrician is a researcher or a specialist in bibliometrics. It is near-synonymous with an informetrican (who studies informetrics), a scientometrican (who study scientometrics) and a webometrician, who study webometrics. == Notable bibliometricians == Christine L. Borgman Samuel C. Bradford Blaise Cronin Margaret Elizabeth Egan Eugene Garfield (developer of the Science Citation Index and the Impact factor) Jorge E. Hirsch (developer of the h-index) Alfred J. Lotka Vasily Nalimov Derek J. de Solla Price Ronald Rousseau George Kingsley Zipf

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  • Microsoft Query

    Microsoft Query

    Microsoft Query is a visual method of creating database queries using examples based on a text string, the name of a document or a list of documents. The QBE system converts the user input into a formal database query using Structured Query Language (SQL) on the backend, allowing the user to perform powerful searches without having to explicitly compose them in SQL, and without even needing to know SQL. It is derived from Moshé M. Zloof's original Query by Example (QBE) implemented in the mid-1970s at IBM's Research Centre in Yorktown, New York. In the context of Microsoft Access, QBE is used for introducing students to database querying, and as a user-friendly database management system for small businesses. Microsoft Excel allows results of QBE queries to be embedded in spreadsheets.

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