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  • List of computer graphics journals

    List of computer graphics journals

    List of computer graphics journals includes notable peer-reviewed scientific and academic journals that focus on computer graphics, visualization, and related areas such as rendering, animation, image processing, and geometric modeling. == Journals == ACM Transactions on Graphics Computers & Graphics IEEE Computer Graphics and Applications IEEE Transactions on Computer-Aided Design of Integrated Circuits and Systems Graphical Models Journal of Computer Graphics Techniques Presence: Teleoperators and Virtual Environments Virtual Reality Simulation & Gaming

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  • Predictor–corrector method

    Predictor–corrector method

    In numerical analysis, predictor–corrector methods belong to a class of algorithms designed to integrate ordinary differential equations – to find an unknown function that satisfies a given differential equation. All such algorithms proceed in two steps: The initial, "prediction" step, starts from a function fitted to the function-values and derivative-values at a preceding set of points to extrapolate ("anticipate") this function's value at a subsequent, new point. The next, "corrector" step refines the initial approximation by using the predicted value of the function and another method to interpolate that unknown function's value at the same subsequent point. == Predictor–corrector methods for solving ODEs == When considering the numerical solution of ordinary differential equations (ODEs), a predictor–corrector method typically uses an explicit method for the predictor step and an implicit method for the corrector step. === Example: Euler method with the trapezoidal rule === A simple predictor–corrector method (known as Heun's method) can be constructed from the Euler method (an explicit method) and the trapezoidal rule (an implicit method). Consider the differential equation y ′ = f ( t , y ) , y ( t 0 ) = y 0 , {\displaystyle y'=f(t,y),\quad y(t_{0})=y_{0},} and denote the step size by h {\displaystyle h} . First, the predictor step: starting from the current value y i {\displaystyle y_{i}} , calculate an initial guess value y ~ i + 1 {\displaystyle {\tilde {y}}_{i+1}} via the Euler method, y ~ i + 1 = y i + h f ( t i , y i ) . {\displaystyle {\tilde {y}}_{i+1}=y_{i}+hf(t_{i},y_{i}).} Next, the corrector step: improve the initial guess using trapezoidal rule, y i + 1 = y i + 1 2 h ( f ( t i , y i ) + f ( t i + 1 , y ~ i + 1 ) ) . {\displaystyle y_{i+1}=y_{i}+{\tfrac {1}{2}}h{\bigl (}f(t_{i},y_{i})+f(t_{i+1},{\tilde {y}}_{i+1}){\bigr )}.} That value is used as the next step. === PEC mode and PECE mode === There are different variants of a predictor–corrector method, depending on how often the corrector method is applied. The Predict–Evaluate–Correct–Evaluate (PECE) mode refers to the variant in the above example: y ~ i + 1 = y i + h f ( t i , y i ) , y i + 1 = y i + 1 2 h ( f ( t i , y i ) + f ( t i + 1 , y ~ i + 1 ) ) . {\displaystyle {\begin{aligned}{\tilde {y}}_{i+1}&=y_{i}+hf(t_{i},y_{i}),\\y_{i+1}&=y_{i}+{\tfrac {1}{2}}h{\bigl (}f(t_{i},y_{i})+f(t_{i+1},{\tilde {y}}_{i+1}){\bigr )}.\end{aligned}}} It is also possible to evaluate the function f only once per step by using the method in Predict–Evaluate–Correct (PEC) mode: y ~ i + 1 = y i + h f ( t i , y ~ i ) , y i + 1 = y i + 1 2 h ( f ( t i , y ~ i ) + f ( t i + 1 , y ~ i + 1 ) ) . {\displaystyle {\begin{aligned}{\tilde {y}}_{i+1}&=y_{i}+hf(t_{i},{\tilde {y}}_{i}),\\y_{i+1}&=y_{i}+{\tfrac {1}{2}}h{\bigl (}f(t_{i},{\tilde {y}}_{i})+f(t_{i+1},{\tilde {y}}_{i+1}){\bigr )}.\end{aligned}}} Additionally, the corrector step can be repeated in the hope that this achieves an even better approximation to the true solution. If the corrector method is run twice, this yields the PECECE mode: y ~ i + 1 = y i + h f ( t i , y i ) , y ^ i + 1 = y i + 1 2 h ( f ( t i , y i ) + f ( t i + 1 , y ~ i + 1 ) ) , y i + 1 = y i + 1 2 h ( f ( t i , y i ) + f ( t i + 1 , y ^ i + 1 ) ) . {\displaystyle {\begin{aligned}{\tilde {y}}_{i+1}&=y_{i}+hf(t_{i},y_{i}),\\{\hat {y}}_{i+1}&=y_{i}+{\tfrac {1}{2}}h{\bigl (}f(t_{i},y_{i})+f(t_{i+1},{\tilde {y}}_{i+1}){\bigr )},\\y_{i+1}&=y_{i}+{\tfrac {1}{2}}h{\bigl (}f(t_{i},y_{i})+f(t_{i+1},{\hat {y}}_{i+1}){\bigr )}.\end{aligned}}} The PECEC mode has one fewer function evaluation than PECECE mode. More generally, if the corrector is run k times, the method is in P(EC)k or P(EC)kE mode. If the corrector method is iterated until it converges, this could be called PE(CE)∞.

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  • PureXML

    PureXML

    pureXML is the native XML storage feature in the IBM Db2 data server. pureXML provides query languages, storage technologies, indexing technologies, and other features to support XML data. The word pure in pureXML was chosen to indicate that Db2 natively stores and natively processes XML data in its inherent hierarchical structure, as opposed to treating XML data as plain text or converting it into a relational format. == Technical information == Db2 includes two distinct storage mechanisms: one for efficiently managing traditional SQL data types, and another for managing XML data. The underlying storage mechanism is transparent to users and applications; they simply use SQL (including SQL with XML extensions or SQL/XML) or XQuery to work with the data. XML data is stored in columns of Db2 tables that have the XML data type. XML data is stored in a parsed format that reflects the hierarchical nature of the original XML data. As such, pureXML uses trees and nodes as its model for storing and processing XML data. If you instruct Db2 to validate XML data against an XML schema prior to storage, Db2 annotates all nodes in the XML hierarchy with information about the schema types; otherwise, it will annotate the nodes with default type information. Upon storage, Db2 preserves the internal structure of XML data, converting its tag names and other information into integer values. Doing so helps conserve disk space and also improves the performance of queries that use navigational expressions. However, users aren't aware of this internal representation. Finally, Db2 automatically splits XML nodes across multiple database pages, as needed. XML schemas specify which XML elements are valid, in what order these elements should appear in XML data, which XML data types are associated with each element, and so on. pureXML allows you to validate the cells in a column of XML data against no schema, one schema, or multiple schemas. pureXML also provides tools to support evolving XML schemas. IBM has enhanced its programming language interfaces to support access to its XML data. These enhancements span Java (JDBC), C (embedded SQL and call-level interface), COBOL (embedded SQL), PHP, and Microsoft's .NET Framework (through the DB2.NET provider). == History == pureXML was first included in the DB2 9 for Linux, Unix, and Microsoft Windows release, which was codenamed Viper, in June 2006. It was available on DB2 9 for z/OS in March 2007. In October 2007, IBM released DB2 9.5 with improved XML data transaction performance and improved storage savings. In June 2009, IBM released DB2 9.7 with XML supported for database-partitioned, range-partitioned, and multi-dimensionally clustered tables as well as compression of XML data and indices. == Competition == Db2 is a hybrid data server—it offers data management for traditional relational data, as well as providing native XML data management. Other vendors that offer data management for both relational data and native XML storage include Oracle with its 11g product and Microsoft with its SQL Server product. pureXML also competes with native XML databases like BaseX, eXist, MarkLogic or Sedna. == Books == IBM International Technical Support Organization (ITSO) has published the following books, which are available in print or as free e-books: DB2 9: pureXML Overview and Fast Start DB2 9 pureXML Guide The following books are also available for purchase: DB2 pureXML Cookbook: Master the Power of IBM Hybrid Data Server == Education and training == The following pureXML classroom and online courses are available from IBM Education: Query and Manage XML Data with DB2 9. IBM course CG130. Classroom. Duration: 4 days. Query XML Data with DB2 9. IBM course CG100. Classroom. Duration: 2 days (first 2 days of CG130). Managing XML Data in DB2 9. IBM course CG160. Classroom. Duration: 2 days (last 2 days of CG130). DB2 pureXML. IBM Course CT140. Self-paced study plus Live Virtual Classroom.

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  • Tertiary source

    Tertiary source

    A tertiary source is an index or textual consolidation of already published primary and secondary sources that does not provide additional interpretations or analysis of the sources. Some tertiary sources can be used as an aid to find key (seminal) sources, key terms, general common knowledge and established mainstream science on a topic. The exact definition of tertiary varies by academic field. Academic research standards generally do not accept tertiary sources such as encyclopedias as citations, although survey articles are frequently cited rather than the original publication. == Overlap with secondary sources == As is also the case with distinguishing primary and secondary sources in some disciplines, there is not always a clear distinguishing line between secondary and tertiary sources. Depending on the topic of research, a scholar may use a bibliography, dictionary, or encyclopedia as either a tertiary or a secondary source. This causes some difficulty in defining many sources as either one type or the other. In some academic disciplines, the differentiation between a secondary and tertiary source is relative. In the United Nations International Scientific Information System (UNISIST) model, a secondary source is a bibliography, whereas a tertiary source is a synthesis of primary sources. == Types of tertiary sources == Tertiary sources can come in book form or as an online resource. Tertiary sources in book form are frequently organised in alphabetical order, whereas an online tertiary source may be searchable by keyword. Examples of tertiary sources include; reference books, encyclopedias, dictionaries, some textbooks, abstracts, directories, factbooks, handbooks, manuals and compendia. Indexes, bibliographies, concordances, and databases are aggregates of primary and secondary sources and therefore often considered tertiary sources. They may also serve as a point of access to the full or partial text of primary and secondary sources. Almanacs, travel guides, field guides, and timelines are also examples of tertiary sources. Tertiary sources attempt to summarize, collect, and consolidate the source materials into an overview without adding analysis and synthesis of new conclusions. Wikipedia is a tertiary source.

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  • Local Economic Assessment Package

    Local Economic Assessment Package

    The Local Economic Assessment Package (also known as “EDR-LEAP” or “LEAP Model”) is a web-based, interactive database and software tool used by local and regional agencies in the US to improve strategies for economic development. It provides local economic performance measures, and benchmarks for comparison of economic development factors against competing regions. It works by incorporating elements of economic base analysis as well as gap analysis and business cluster analysis to identify needs for improvement and paths for economic growth. The LEAP Model was originally developed for the Appalachian Regional Commission. Its theory and applications are discussed in peer-reviewed journal articles.

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  • DPVweb

    DPVweb

    DPVweb is a database for virologists working on plant viruses combining taxonomic, bioinformatic and symptom data. == Description == DPVweb is a central web-based source of information about viruses, viroids and satellites of plants, fungi and protozoa. It provides comprehensive taxonomic information, including brief descriptions of each family and genus, and classified lists of virus sequences. It makes use of a large database that also holds detailed, curated, information for all sequences of viruses, viroids and satellites of plants, fungi and protozoa that are complete or that contain at least one complete gene. There are currently about 10,000 such sequences. For comparative purposes, DPVweb also contains a representative sequence of all other fully sequenced virus species with an RNA or single-stranded DNA genome. For each curated sequence the database contains the start and end positions of each feature (gene, non-translated region, etc.), and these have been checked for accuracy. As far as possible, the nomenclature for genes and proteins are standardized within genera and families. Sequences of features (either as DNA or amino acid sequences) can be directly downloaded from the website in FASTA format. The sequence information can also be accessed via client software for personal computers. == History == The Descriptions of Plant Viruses (DPVs) were first published by the Association of Applied Biologists in 1970 as a series of leaflets, each one written by an expert describing a particular plant virus. In 1998 all of the 354 DPVs published in paper were scanned, and converted into an electronic format in a database and distributed on CDROM. In 2001 the descriptions were made available on the new DPVweb site, providing open access to the now 400+ DPVs (currently 415) as well as taxonomic and sequence data on all plant viruses. == Uses == DPVweb is an aid to researchers in the field of plant virology as well as an educational resource for students of virology and molecular biology. The site provides a single point of access for all known plant virus genome sequences making it easy to collect these sequences together for further analysis and comparison. Sequence data from the DPVweb database have proved valuable for a number of projects: survey of codon usage bias amongst all plant viruses, two-way comparisons between comprehensive sets of sequences from the families Flexiviridae and Potyviridae that have helped inform taxonomy and clarify genus and species discrimination criteria, a survey and verification of the polyprotein cleavage sites within the family Potyviridae.

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  • Online analytical processing

    Online analytical processing

    In computing, online analytical processing (OLAP) (), is an approach to quickly answer multi-dimensional analytical (MDA) queries. The term OLAP was created as a slight modification of the traditional database term online transaction processing (OLTP). OLAP is part of the broader category of business intelligence, which also encompasses relational databases, report writing and data mining. Typical applications of OLAP include business reporting for sales, marketing, management reporting, business process management (BPM), budgeting and forecasting, financial reporting and similar areas, with new applications emerging, such as agriculture. OLAP tools enable users to analyse multidimensional data interactively from multiple perspectives. OLAP consists of three basic analytical operations: consolidation (roll-up), drill-down, and slicing and dicing. Consolidation involves the aggregation of data that can be accumulated and computed in one or more dimensions. For example, all sales offices are rolled up to the sales department or sales division to anticipate sales trends. By contrast, the drill-down is a technique that allows users to navigate through the details. For instance, users can view the sales by individual products that make up a region's sales. Slicing and dicing is a feature whereby users can take out (slicing) a specific set of data of the OLAP cube and view (dicing) the slices from different viewpoints. These viewpoints are sometimes called dimensions (such as looking at the same sales by salesperson, or by date, or by customer, or by product, or by region, etc.). Databases configured for OLAP use a multidimensional data model, allowing for complex analytical and ad hoc queries with a rapid execution time. They borrow aspects of navigational databases, hierarchical databases and relational databases. OLAP is typically contrasted to OLTP (online transaction processing), which is generally characterized by much less complex queries, in a larger volume, to process transactions rather than for the purpose of business intelligence or reporting. Whereas OLAP systems are mostly optimized for read, OLTP has to process all kinds of queries (read, insert, update and delete). == Overview of OLAP systems == At the core of any OLAP system is an OLAP cube (also called a 'multidimensional cube' or a hypercube). It consists of numeric facts called measures that are categorized by dimensions. The measures are placed at the intersections of the hypercube, which is spanned by the dimensions as a vector space. The usual interface to manipulate an OLAP cube is a matrix interface, like Pivot tables in a spreadsheet program, which performs projection operations along the dimensions, such as aggregation or averaging. The cube metadata is typically created from a star schema or snowflake schema or fact constellation of tables in a relational database. Measures are derived from the records in the fact table and dimensions are derived from the dimension tables. Each measure can be thought of as having a set of labels, or meta-data associated with it. A dimension is what describes these labels; it provides information about the measure. A simple example would be a cube that contains a store's sales as a measure, and Date/Time as a dimension. Each Sale has a Date/Time label that describes more about that sale. For example: Sales Fact Table +-------------+----------+ | sale_amount | time_id | +-------------+----------+ Time Dimension | 930.10| 1234 |----+ +---------+-------------------+ +-------------+----------+ | | time_id | timestamp | | +---------+-------------------+ +---->| 1234 | 20080902 12:35:43 | +---------+-------------------+ === Multidimensional databases === Multidimensional structure is defined as "a variation of the relational model that uses multidimensional structures to organize data and express the relationships between data". The structure is broken into cubes and the cubes are able to store and access data within the confines of each cube. "Each cell within a multidimensional structure contains aggregated data related to elements along each of its dimensions". Even when data is manipulated it remains easy to access and continues to constitute a compact database format. The data still remains interrelated. Multidimensional structure is quite popular for analytical databases that use online analytical processing (OLAP) applications. Analytical databases use these databases because of their ability to deliver answers to complex business queries swiftly. Data can be viewed from different angles, which gives a broader perspective of a problem unlike other models. === Aggregations === It has been claimed that for complex queries OLAP cubes can produce an answer in around 0.1% of the time required for the same query on OLTP relational data. The most important mechanism in OLAP which allows it to achieve such performance is the use of aggregations. Aggregations are built from the fact table by changing the granularity on specific dimensions and aggregating up data along these dimensions, using an aggregate function (or aggregation function). The number of possible aggregations is determined by every possible combination of dimension granularities. The combination of all possible aggregations and the base data contains the answers to every query which can be answered from the data. Because usually there are many aggregations that can be calculated, often only a predetermined number are fully calculated; the remainder are solved on demand. The problem of deciding which aggregations (views) to calculate is known as the view selection problem. View selection can be constrained by the total size of the selected set of aggregations, the time to update them from changes in the base data, or both. The objective of view selection is typically to minimize the average time to answer OLAP queries, although some studies also minimize the update time. View selection is NP-complete. Many approaches to the problem have been explored, including greedy algorithms, randomized search, genetic algorithms and A search algorithm. Some aggregation functions can be computed for the entire OLAP cube by precomputing values for each cell, and then computing the aggregation for a roll-up of cells by aggregating these aggregates, applying a divide and conquer algorithm to the multidimensional problem to compute them efficiently. For example, the overall sum of a roll-up is just the sum of the sub-sums in each cell. Functions that can be decomposed in this way are called decomposable aggregation functions, and include COUNT, MAX, MIN, and SUM, which can be computed for each cell and then directly aggregated; these are known as self-decomposable aggregation functions. In other cases, the aggregate function can be computed by computing auxiliary numbers for cells, aggregating these auxiliary numbers, and finally computing the overall number at the end; examples include AVERAGE (tracking sum and count, dividing at the end) and RANGE (tracking max and min, subtracting at the end). In other cases, the aggregate function cannot be computed without analyzing the entire set at once, though in some cases approximations can be computed; examples include DISTINCT COUNT, MEDIAN, and MODE; for example, the median of a set is not the median of medians of subsets. These latter are difficult to implement efficiently in OLAP, as they require computing the aggregate function on the base data, either computing them online (slow) or precomputing them for possible rollouts (large space). == Types == OLAP systems have been traditionally categorized using the following taxonomy. === Multidimensional OLAP (MOLAP) === MOLAP (multi-dimensional online analytical processing) is the classic form of OLAP and is sometimes referred to as just OLAP. MOLAP stores this data in an optimized multi-dimensional array storage, rather than in a relational database. Some MOLAP tools require the pre-computation and storage of derived data, such as consolidations – the operation known as processing. Such MOLAP tools generally utilize a pre-calculated data set referred to as a data cube. The data cube contains all the possible answers to a given range of questions. As a result, they have a very fast response to queries. On the other hand, updating can take a long time depending on the degree of pre-computation. Pre-computation can also lead to what is known as data explosion. Other MOLAP tools, particularly those that implement the functional database model do not pre-compute derived data but make all calculations on demand other than those that were previously requested and stored in a cache. Advantages of MOLAP Fast query performance due to optimized storage, multidimensional indexing and caching. Smaller on-disk size of data compared to data stored in relational database due to compression techniques. Automated computation of higher-level aggregates of the data. It is very compact for low dimension data se

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  • BioCreative

    BioCreative

    BioCreAtIvE (A critical assessment of text mining methods in molecular biology) consists in a community-wide effort for evaluating information extraction and text mining developments in the biological domain. It was preceded by the Knowledge Discovery and Data Mining (KDD) Challenge Cup for detection of gene mentions. == Community Challenges == === First edition (2004-2005) === Three main tasks were posed at the first BioCreAtIvE challenge: the entity extraction task, the gene name normalization task, and the functional annotation of gene products task. The data sets produced by this contest serve as a Gold Standard training and test set to evaluate and train Bio-NER tools and annotation extraction tools. === Second edition (2006-2007) === The second BioCreAtIvE challenge (2006-2007) had also 3 tasks: detection of gene mentions, extraction of unique idenfiers for genes and extraction information related to physical protein-protein interactions. It counted with participation of 44 teams from 13 countries. === Third edition (2011-2012) === The third edition of BioCreative included for the first time the InterActive Task (IAT), designed to evaluate the practical usability of text mining tools in real-world biocuration tasks. === Fifth edition (2016) === BioCreative V had 5 different tracks, including an interactive task (IAT) for usability of text mining systems and a track using the BioC format for curating information for BioGRID.

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  • Production (computer science)

    Production (computer science)

    In computer science, a production or production rule is a rewrite rule that replaces some symbols with other symbols. A finite set of productions P {\displaystyle P} is the main component in the specification of a formal grammar (specifically a generative grammar). In such grammars, a set of productions is a special case of relation on the set of strings V ∗ {\displaystyle V^{}} (where ∗ {\displaystyle {}^{}} is the Kleene star operator) over a finite set of symbols V {\displaystyle V} called a vocabulary that defines which non-empty strings can be substituted with others. The set of productions is thus a special kind subset P ⊂ V ∗ × V ∗ {\displaystyle P\subset V^{}\times V^{}} and productions are then written in the form u → v {\displaystyle u\to v} to mean that ( u , v ) ∈ P {\displaystyle (u,v)\in P} (not to be confused with → {\displaystyle \to } being used as function notation, since there may be multiple rules for the same u {\displaystyle u} ). Given two subsets A , B ⊂ V ∗ {\displaystyle A,B\subset V^{}} , productions can be restricted to satisfy P ⊂ A × B {\displaystyle P\subset A\times B} , in which case productions are said "to be of the form A → B {\displaystyle A\to B} . Different choices and constructions of A , B {\displaystyle A,B} lead to different types of grammars. In general, any production of the form u → ϵ , {\displaystyle u\to \epsilon ,} where ϵ {\displaystyle \epsilon } is the empty string (sometimes also denoted λ {\displaystyle \lambda } ), is called an erasing rule, while productions that would produce strings out of nowhere, namely of the form ϵ → v , {\displaystyle \epsilon \to v,} are never allowed. In order to allow the production rules to create meaningful sentences, the vocabulary is partitioned into (disjoint) sets Σ {\displaystyle \Sigma } and N {\displaystyle N} providing two different roles: Σ {\displaystyle \Sigma } denotes the terminal symbols known as an alphabet containing the symbols allowed in a sentence; N {\displaystyle N} denotes nonterminal symbols, containing a distinguished start symbol S ∈ N {\displaystyle S\in N} , that are needed together with the production rules to define how to build the sentences. In the most general case of an unrestricted grammar, a production u → v {\displaystyle u\to v} , is allowed to map arbitrary strings u {\displaystyle u} and v {\displaystyle v} in V {\displaystyle V} (terminals and nonterminals), as long as u {\displaystyle u} is not empty. So unrestricted grammars have productions of the form V ∗ ∖ { ϵ } → V ∗ {\displaystyle V^{}\setminus \{\epsilon \}\to V^{}} or if we want to disallow changing finished sentences V ∗ N V ∗ = ( V ∗ ∖ Σ ∗ ) → V ∗ {\displaystyle V^{}NV^{}=(V^{}\setminus \Sigma ^{})\to V^{}} , where V ∗ N V ∗ {\displaystyle V^{}NV^{}} indicates concatenation and forces a non-terminal symbol to always be present on the left-hand side of the productions, and ∖ {\displaystyle \setminus } denotes set minus or set difference. If we do not allow the start symbol to occur in v {\displaystyle v} (the word on the right side), we have to replace V ∗ {\displaystyle V^{}} with ( V ∖ { S } ) ∗ {\displaystyle (V\setminus \{S\})^{}} on the right-hand side. The other types of formal grammar in the Chomsky hierarchy impose additional restrictions on what constitutes a production. Notably in a context-free grammar, the left-hand side of a production must be a single nonterminal symbol. So productions are of the form: N → V ∗ {\displaystyle N\to V^{}} == Grammar generation == To generate a string in the language, one begins with a string consisting of only a single start symbol, and then successively applies the rules (any number of times, in any order) to rewrite this string. This stops when a string containing only terminals is obtained. The language consists of all the strings that can be generated in this manner. Any particular sequence of legal choices taken during this rewriting process yields one particular string in the language. If there are multiple different ways of generating this single string, then the grammar is said to be ambiguous. For example, assume the alphabet consists of a {\displaystyle a} and b {\displaystyle b} , with the start symbol S {\displaystyle S} , and we have the following rules: 1. S → a S b {\displaystyle S\rightarrow aSb} 2. S → b a {\displaystyle S\rightarrow ba} then we start with S {\displaystyle S} , and can choose a rule to apply to it. If we choose rule 1, we replace S {\displaystyle S} with a S b {\displaystyle aSb} and obtain the string a S b {\displaystyle aSb} . If we choose rule 1 again, we replace S {\displaystyle S} with a S b {\displaystyle aSb} and obtain the string a a S b b {\displaystyle aaSbb} . This process is repeated until we only have symbols from the alphabet (i.e., a {\displaystyle a} and b {\displaystyle b} ). If we now choose rule 2, we replace S {\displaystyle S} with b a {\displaystyle ba} and obtain the string a a b a b b {\displaystyle aababb} , and are done. We can write this series of choices more briefly, using symbols: S ⇒ a S b ⇒ a a S b b ⇒ a a b a b b {\displaystyle S\Rightarrow aSb\Rightarrow aaSbb\Rightarrow aababb} . The language of the grammar is the set of all the strings that can be generated using this process: { b a , a b a b , a a b a b b , a a a b a b b b , … } {\displaystyle \{ba,abab,aababb,aaababbb,\dotsc \}} .

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  • Algorithmic game theory

    Algorithmic game theory

    Algorithmic game theory (AGT) is an interdisciplinary field at the intersection of game theory and computer science, focused on understanding and designing algorithms for environments where multiple strategic agents interact. This research area combines computational thinking with economic principles to address challenges that emerge when algorithmic inputs come from self-interested participants. In traditional algorithm design, inputs are assumed to be fixed and reliable. However, in many real-world applications—such as online auctions, internet routing, digital advertising, and resource allocation systems—inputs are provided by multiple independent agents who may strategically misreport information to manipulate outcomes in their favor. AGT provides frameworks to analyze and design systems that remain effective despite such strategic behavior. The field can be approached from two complementary perspectives: Analysis: Evaluating existing algorithms and systems through game-theoretic tools to understand their strategic properties. This includes calculating and proving properties of Nash equilibria (stable states where no participant can benefit by changing only their own strategy), measuring price of anarchy (efficiency loss due to selfish behavior), and analyzing best-response dynamics (how systems evolve when players sequentially optimize their strategies). Design: Creating mechanisms and algorithms with both desirable computational properties and game-theoretic robustness. This sub-field, known as algorithmic mechanism design, develops systems that incentivize truthful behavior while maintaining computational efficiency. Algorithm designers in this domain must satisfy traditional algorithmic requirements (such as polynomial-time running time and good approximation ratio) while simultaneously addressing incentive constraints that ensure participants act according to the system's intended design. == History == === Nisan-Ronen: a new framework for studying algorithms === In 1999, the seminal paper of Noam Nisan and Amir Ronen drew the attention of the Theoretical Computer Science community to designing algorithms for selfish (strategic) users. As they claim in the abstract: We consider algorithmic problems in a distributed setting where the participants cannot be assumed to follow the algorithm but rather their own self-interest. As such participants, termed agents, are capable of manipulating the algorithm, the algorithm designer should ensure in advance that the agents’ interests are best served by behaving correctly. Following notions from the field of mechanism design, we suggest a framework for studying such algorithms. In this model the algorithmic solution is adorned with payments to the participants and is termed a mechanism. The payments should be carefully chosen as to motivate all participants to act as the algorithm designer wishes. We apply the standard tools of mechanism design to algorithmic problems and in particular to the shortest path problem. This paper coined the term algorithmic mechanism design and was recognized by the 2012 Gödel Prize committee as one of "three papers laying foundation of growth in Algorithmic Game Theory". === Price of Anarchy === The other two papers cited in the 2012 Gödel Prize for fundamental contributions to Algorithmic Game Theory introduced and developed the concept of "Price of Anarchy". In their 1999 paper "Worst-case Equilibria", Koutsoupias and Papadimitriou proposed a new measure of the degradation of system efficiency due to the selfish behavior of its agents: the ratio of between system efficiency at an optimal configuration, and its efficiency at the worst Nash equilibrium. (The term "Price of Anarchy" only appeared a couple of years later.) === The Internet as a catalyst === The Internet created a new economy—both as a foundation for exchange and commerce, and in its own right. The computational nature of the Internet allowed for the use of computational tools in this new emerging economy. On the other hand, the Internet itself is the outcome of actions of many. This was new to the classic, ‘top-down’ approach to computation that held till then. Thus, game theory is a natural way to view the Internet and interactions within it, both human and mechanical. Game theory studies equilibria (such as the Nash equilibrium). An equilibrium is generally defined as a state in which no player has an incentive to change their strategy. Equilibria are found in several fields related to the Internet, for instance financial interactions and communication load-balancing. Game theory provides tools to analyze equilibria, and a common approach is then to ‘find the game’—that is, to formalize specific Internet interactions as a game, and to derive the associated equilibria. Rephrasing problems in terms of games allows the analysis of Internet-based interactions and the construction of mechanisms to meet specified demands. If equilibria can be shown to exist, a further question must be answered: can an equilibrium be found, and in reasonable time? This leads to the analysis of algorithms for finding equilibria. Of special importance is the complexity class PPAD, which includes many problems in algorithmic game theory. == Areas of research == === Algorithmic mechanism design === Mechanism design is the subarea of economics that deals with optimization under incentive constraints. Algorithmic mechanism design considers the optimization of economic systems under computational efficiency requirements. Typical objectives studied include revenue maximization and social welfare maximization. === Inefficiency of equilibria === The concepts of price of anarchy and price of stability were introduced to capture the loss in performance of a system due to the selfish behavior of its participants. The price of anarchy captures the worst-case performance of the system at equilibrium relative to the optimal performance possible. The price of stability, on the other hand, captures the relative performance of the best equilibrium of the system. These concepts are counterparts to the notion of approximation ratio in algorithm design. === Complexity of finding equilibria === The existence of an equilibrium in a game is typically established using non-constructive fixed point theorems. There are no efficient algorithms known for computing Nash equilibria. The problem is complete for the complexity class PPAD even in 2-player games. In contrast, correlated equilibria can be computed efficiently using linear programming, as well as learned via no-regret strategies. === Computational social choice === Computational social choice studies computational aspects of social choice, the aggregation of individual agents' preferences. Examples include algorithms and computational complexity of voting rules and coalition formation. Other topics include: Algorithms for computing Market equilibria Fair division Multi-agent systems And the area counts with diverse practical applications: Sponsored search auctions Spectrum auctions Cryptocurrencies Prediction markets Reputation systems Sharing economy Matching markets such as kidney exchange and school choice Crowdsourcing and peer grading Economics of the cloud == Journals and newsletters == ACM Transactions on Economics and Computation (TEAC) SIGEcom Exchanges Algorithmic Game Theory papers are often also published in Game Theory journals such as GEB, Economics journals such as Econometrica, and Computer Science journals such as SICOMP.

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  • Jump-and-Walk algorithm

    Jump-and-Walk algorithm

    Jump-and-Walk is an algorithm for point location in triangulations (though most of the theoretical analysis were performed in 2D and 3D random Delaunay triangulations). Surprisingly, the algorithm does not need any preprocessing or complex data structures except some simple representation of the triangulation itself. The predecessor of Jump-and-Walk was due to Lawson (1977) and Green and Sibson (1978), which picks a random starting point S and then walks from S toward the query point Q one triangle at a time. But no theoretical analysis was known for these predecessors until after mid-1990s. Jump-and-Walk picks a small group of sample points and starts the walk from the sample point which is the closest to Q until the simplex containing Q is found. The algorithm was a folklore in practice for some time, and the formal presentation of the algorithm and the analysis of its performance on 2D random Delaunay triangulation was done by Devroye, Mucke and Zhu in mid-1990s (the paper appeared in Algorithmica, 1998). The analysis on 3D random Delaunay triangulation was done by Mucke, Saias and Zhu (ACM Symposium of Computational Geometry, 1996). In both cases, a boundary condition was assumed, namely, Q must be slightly away from the boundary of the convex domain where the vertices of the random Delaunay triangulation are drawn. In 2004, Devroye, Lemaire and Moreau showed that in 2D the boundary condition can be withdrawn (the paper appeared in Computational Geometry: Theory and Applications, 2004). Jump-and-Walk has been used in many famous software packages, e.g., QHULL, Triangle and CGAL.

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  • Subject indexing

    Subject indexing

    Subject indexing is the act of describing or classifying a document by index terms, keywords, or other symbols in order to indicate what different documents are about, to summarize their contents or to increase findability. In other words, the objective is to identify and describe the subject of documents. Indexes are constructed, separately, on three distinct levels: terms in a document, such as a book; objects in a collection, such as a library; and documents (such as books and articles) within a field of knowledge. Subject indexing is used in information retrieval especially to create bibliographic indexes to retrieve documents on a particular subject. Examples of academic indexing services are Zentralblatt MATH, Chemical Abstracts, and PubMed. The index terms were mostly assigned by experts but author keywords are also common. The process of indexing begins with any analysis of the subject of the document. The indexer must then identify terms that appropriately identify the subject, either by extracting words directly from the document or assigning words from a controlled vocabulary. The terms in the index are then presented in a systematic order. Indexers must decide how many terms to include and how specific the terms should be. Together this gives a depth of indexing. == Subject analysis == The first step in indexing is to decide on the subject matter of the document. In manual indexing, the indexer would consider the subject matter in terms of answer to a set of questions such as "Does the document deal with a specific product, condition or phenomenon?". As the analysis is influenced by the knowledge and experience of the indexer, it follows that two indexers may analyze the content differently and so come up with different index terms. This will impact on the success of retrieval. === Automatic vs. manual subject analysis === Automatic indexing follows set processes of analyzing frequencies of word patterns and comparing results to other documents in order to assign to subject categories. This requires no understanding of the material being indexed. This leads to more uniform indexing but at the expense of the true meaning being interpreted. A computer program will not understand the meaning of statements and may therefore fail to assign some relevant terms or assign incorrectly. Human indexers focus their attention on certain parts of the document such as the title, abstract, summary and conclusions, as analyzing the full text in depth is costly and time-consuming. An automated system takes away the time limit and allows the entire document to be analyzed, but also has the option to be directed to particular parts of the document. == Term selection == The second stage of indexing involves the translation of the subject analysis into a set of index terms. This can involve extracting from the document or assigning from a controlled vocabulary. With the ability to conduct a full text search widely available, many people have come to rely on their own expertise in conducting information searches and full text search has become very popular. Subject indexing and its experts, professional indexers, catalogers, and librarians, remains crucial to information organization and retrieval. These experts understand controlled vocabularies and are able to find information that cannot be located by full text search. The cost of expert analysis to create subject indexing is not easily compared to the cost of hardware, software and labor to manufacture a comparable set of full-text, fully searchable materials. With new web applications that allow every user to annotate documents, social tagging has gained popularity especially in the Web. One application of indexing, the book index, remains relatively unchanged despite the information revolution. === Extraction/Derived indexing === Extraction indexing involves taking words directly from the document. It uses natural language and lends itself well to automated techniques where word frequencies are calculated and those with a frequency over a pre-determined threshold are used as index terms. A stop-list containing common words (such as "the", "and") would be referred to and such stop words would be excluded as index terms. Automated extraction indexing may lead to loss of meaning of terms by indexing single words as opposed to phrases. Although it is possible to extract commonly occurring phrases, it becomes more difficult if key concepts are inconsistently worded in phrases. Automated extraction indexing also has the problem that, even with use of a stop-list to remove common words, some frequent words may not be useful for allowing discrimination between documents. For example, the term glucose is likely to occur frequently in any document related to diabetes. Therefore, use of this term would likely return most or all the documents in the database. Post-coordinated indexing where terms are combined at the time of searching would reduce this effect but the onus would be on the searcher to link appropriate terms as opposed to the information professional. In addition terms that occur infrequently may be highly significant for example a new drug may be mentioned infrequently but the novelty of the subject makes any reference significant. One method for allowing rarer terms to be included and common words to be excluded by automated techniques would be a relative frequency approach where frequency of a word in a document is compared to frequency in the database as a whole. Therefore, a term that occurs more often in a document than might be expected based on the rest of the database could then be used as an index term, and terms that occur equally frequently throughout will be excluded. Another problem with automated extraction is that it does not recognize when a concept is discussed but is not identified in the text by an indexable keyword. Since this process is based on simple string matching and involves no intellectual analysis, the resulting product is more appropriately known as a concordance than an index. === Assignment indexing === An alternative is assignment indexing where index terms are taken from a controlled vocabulary. This has the advantage of controlling for synonyms as the preferred term is indexed and synonyms or related terms direct the user to the preferred term. This means the user can find articles regardless of the specific term used by the author and saves the user from having to know and check all possible synonyms. It also removes any confusion caused by homographs by inclusion of a qualifying term. A third advantage is that it allows the linking of related terms whether they are linked by hierarchy or association, e.g. an index entry for an oral medication may list other oral medications as related terms on the same level of the hierarchy but would also link to broader terms such as treatment. Assignment indexing is used in manual indexing to improve inter-indexer consistency as different indexers will have a controlled set of terms to choose from. Controlled vocabularies do not completely remove inconsistencies as two indexers may still interpret the subject differently. == Index presentation == The final phase of indexing is to present the entries in a systematic order. This may involve linking entries. In a pre-coordinated index the indexer determines the order in which terms are linked in an entry by considering how a user may formulate their search. In a post-coordinated index, the entries are presented singly and the user can link the entries through searches, most commonly carried out by computer software. Post-coordination results in a loss of precision in comparison to pre-coordination. == Depth of indexing == Indexers must make decisions about what entries should be included and how many entries an index should incorporate. The depth of indexing describes the thoroughness of the indexing process with reference to exhaustivity and specificity. === Exhaustivity === An exhaustive index is one which lists all possible index terms. Greater exhaustivity gives a higher recall, or more likelihood of all the relevant articles being retrieved, however, this occurs at the expense of precision. This means that the user may retrieve a larger number of irrelevant documents or documents which only deal with the subject in little depth. In a manual system a greater level of exhaustivity brings with it a greater cost as more man-hours are required. The additional time taken in an automated system would be much less significant. At the other end of the scale, in a selective index only the most important aspects are covered. Recall is reduced in a selective index as if an indexer does not include enough terms, a highly relevant article may be overlooked. Therefore, indexers should strive for a balance and consider what the document may be used. They may also have to consider the implications of time and expense. === Specificity === The specificity describes how closel

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  • Spreading activation

    Spreading activation

    Spreading activation is a method for searching associative networks, biological and artificial neural networks, or semantic networks. The search process is initiated by labeling a set of source nodes (e.g. concepts in a semantic network) with weights or "activation" and then iteratively propagating or "spreading" that activation out to other nodes linked to the source nodes. Most often these "weights" are real values that decay as activation propagates through the network. When the weights are discrete this process is often referred to as marker passing. Activation may originate from alternate paths, identified by distinct markers, and terminate when two alternate paths reach the same node. However brain studies show that several different brain areas play an important role in semantic processing. Spreading activation in semantic networks as a model were invented in cognitive psychology to model the fan out effect. Spreading activation can also be applied in information retrieval, by means of a network of nodes representing documents and terms contained in those documents. == Cognitive psychology == As it relates to cognitive psychology, spreading activation is the theory of how the brain iterates through a network of associated ideas to retrieve specific information. The spreading activation theory presents the array of concepts within our memory as cognitive units, each consisting of a node and its associated elements or characteristics, all connected together by edges. A spreading activation network can be represented schematically, in a sort of web diagram with shorter lines between two nodes meaning the ideas are more closely related and will typically be associated more quickly to the original concept. In memory psychology, the spreading activation model holds that people organize their knowledge of the world based on their personal experiences, which in turn form the network of ideas that is the person's knowledge of the world. When a word (the target) is preceded by an associated word (the prime) in word recognition tasks, participants seem to perform better in the amount of time that it takes them to respond. For instance, subjects respond faster to the word "doctor" when it is preceded by "nurse" than when it is preceded by an unrelated word like "carrot". This semantic priming effect with words that are close in meaning within the cognitive network has been seen in a wide range of tasks given by experimenters, ranging from sentence verification to lexical decision and naming. As another example, if the original concept is "red" and the concept "vehicles" is primed, they are much more likely to say "fire engine" instead of something unrelated to vehicles, such as "cherries". If instead "fruits" was primed, they would likely name "cherries" and continue on from there. The activation of pathways in the network has everything to do with how closely linked two concepts are by meaning, as well as how a subject is primed. == Algorithm == A directed graph is populated by Nodes[ 1...N ] each having an associated activation value A [ i ] which is a real number in the range [0.0 ... 1.0]. A Link[ i, j ] connects source node[ i ] with target node[ j ]. Each edge has an associated weight W [ i, j ] usually a real number in the range [0.0 ... 1.0]. Parameters: Firing threshold F, a real number in the range [0.0 ... 1.0] Decay factor D, a real number in the range [0.0 ... 1.0] Steps: Initialize the graph setting all activation values A [ i ] to zero. Set one or more origin nodes to an initial activation value greater than the firing threshold F. A typical initial value is 1.0. For each unfired node [ i ] in the graph having an activation value A [ i ] greater than the node firing threshold F: For each Link [ i, j ] connecting the source node [ i ] with target node [ j ], adjust A [ j ] = A [ j ] + (A [ i ] W [ i, j ] D) where D is the decay factor. If a target node receives an adjustment to its activation value so that it would exceed 1.0, then set its new activation value to 1.0. Likewise maintain 0.0 as a lower bound on the target node's activation value should it receive an adjustment to below 0.0. Once a node has fired it may not fire again, although variations of the basic algorithm permit repeated firings and loops through the graph. Nodes receiving a new activation value that exceeds the firing threshold F are marked for firing on the next spreading activation cycle. If activation originates from more than one node, a variation of the algorithm permits marker passing to distinguish the paths by which activation is spread over the graph The procedure terminates when either there are no more nodes to fire or in the case of marker passing from multiple origins, when a node is reached from more than one path. Variations of the algorithm that permit repeated node firings and activation loops in the graph, terminate after a steady activation state, with respect to some delta, is reached, or when a maximum number of iterations is exceeded. == Examples ==

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  • Enterprise data planning

    Enterprise data planning

    Enterprise data planning is the starting point for enterprise wide change. It states the destination and describes how you will get there. It defines benefits, costs and potential risks. It provides measures to be used along the way to judge progress and adjust the journey according to changing circumstances. Data is fundamental to investment enterprises. Effective, economic management of data underpins operations and enables transformations needed to satisfy customer demands, competition and regulation. Data warehouse(s) and other aspects of the overall data architecture are critical to the enterprise. EDMworks has created a strategic data planning approach for the Investment Sector. It consists of a planning process, planning intranets, templates and training materials. EDMworks planning process is based on the belief that extensive domain knowledge significantly shortens planning iterations and enables progressively higher quality plans to be produced and implemented. This approach drives the development of an effective and economic enterprise data architecture. Enterprise data planning is based on proven business disciplines. Key architectural layers for data and applications are then added in order to provide an enterprise wide understanding of the uses and interdependencies of data. This enables the definition of the core components of the EDM plan: Industry structure and business objectives Assessment of systems and services Target architecture for applications, data and infrastructure Target organization structures Systems, database, infrastructure and organizational plans Business case, costs, benefits, results and risks. EDMworks uses several components from the Open Systems Group TOGAF enterprise systems planning process. TOGAF acts as an extension to good business planning methods to provide a framework for the development of the systems and data architectural components. == History == James Martin was one of the pathfinders in data planning methodologies. He was one of the first to identify data as being an enterprise wide asset that required management. He developed a series of tools and methods to support that process. Most of the large consulting firms developed their own methods to address the same basic issue. Frequently, their approaches were incorporated into their own branded system development methodologies that encompassed the complete systems development life-cycle. Others, such as Ed Tozer, developed more focused offerings that dealt with the complexities of extracting key business needs from senior management and then defining relevant architectural visions for the specific enterprise. From these various sources, the concepts of Business, Data, Applications and Technology Architectures emerged. The Open Group Architectural Framework (TOGAF) has taken this work forward and has established a sound method in TOGAF version 9. EDMworks approach is to adopt these planning and architectural practices as a basis and then add two additional dimensions to the planning and implementation focus: Domain knowledge of the Investments sector. Investments is a complex global industry with a common set of characteristics about clients, information vendors, competition and regulation. Domain knowledge significantly improves the quality of the planning and implementation processes Development of people and teams. Change is a major feature of in any Enterprise Data Management program and people and teams both need development in order to make EDM effective throughout an organization.

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  • Bisection (software engineering)

    Bisection (software engineering)

    Bisection is a method used in software development to identify change sets that result in a specific behavior change. It is mostly employed for finding the patch that introduced a bug. Another application area is finding the patch that indirectly fixed a bug. == Overview == The process of locating the changeset that introduced a specific regression was described as "source change isolation" in 1997 by Brian Ness and Viet Ngo of Cray Research. Regression testing was performed on Cray's compilers in editions comprising one or more changesets. Editions with known regressions could not be validated until developers addressed the problem. Source change isolation narrowed the cause to a single changeset that could then be excluded from editions, unblocking them with respect to this problem, while the author of the change worked on a fix. Ness and Ngo outlined linear search and binary search methods of performing this isolation. Code bisection has the goal of minimizing the effort to find a specific change set. It employs a divide and conquer algorithm that depends on having access to the code history which is usually preserved by revision control in a code repository. == Bisection method == === Code bisection algorithm === Code history has the structure of a directed acyclic graph which can be topologically sorted. This makes it possible to use a divide and conquer search algorithm which: splits up the search space of candidate revisions tests for the behavior in question reduces the search space depending on the test result re-iterates the steps above until a range with at most one bisectable patch candidate remains === Algorithmic complexity === Bisection is in LSPACE having an algorithmic complexity of O ( log ⁡ N ) {\displaystyle O(\log N)} with N {\displaystyle N} denoting the number of revisions in the search space, and is similar to a binary search. === Desirable repository properties === For code bisection it is desirable that each revision in the search space can be built and tested independently. === Monotonicity === For the bisection algorithm to identify a single changeset which caused the behavior being tested to change, the behavior must change monotonically across the search space. For a Boolean function such as a pass/fail test, this means that it only changes once across all changesets between the start and end of the search space. If there are multiple changesets across the search space where the behavior being tested changes between false and true, then the bisection algorithm will find one of them, but it will not necessarily be the root cause of the change in behavior between the start and the end of the search space. The root cause could be a different changeset, or a combination of two or more changesets across the search space. To help deal with this problem, automated tools allow specific changesets to be ignored during a bisection search. == Automation support == Although the bisection method can be completed manually, one of its main advantages is that it can be easily automated. It can thus fit into existing test automation processes: failures in exhaustive automated regression tests can trigger automated bisection to localize faults. Ness and Ngo focused on its potential in Cray's continuous delivery-style environment in which the automatically isolated bad changeset could be automatically excluded from builds. The revision control systems Fossil, Git and Mercurial have built-in functionality for code bisection. The user can start a bisection session with a specified range of revisions from which the revision control system proposes a revision to test, the user tells the system whether the revision tested as "good" or "bad", and the process repeats until the specific "bad" revision has been identified. Other revision control systems, such as Bazaar or Subversion, support bisection through plugins or external scripts. Phoronix Test Suite can do bisection automatically to find performance regressions.

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