Meta Content Framework (MCF) is a specification of a content format for structuring metadata about web sites and other data. == History == MCF was developed by Ramanathan V. Guha at Apple Computer's Advanced Technology Group between 1995 and 1997. Rooted in knowledge-representation systems such as CycL, KRL, and KIF, it sought to describe objects, their attributes, and the relationships between them. One application of MCF was HotSauce, also developed by Guha while at Apple. It generated a 3D visualization of a web site's table of contents, based on MCF descriptions. By late 1996, a few hundred sites were creating MCF files and Apple HotSauce allowed users to browse these MCF representations in 3D. When the research project was discontinued, Guha left Apple for Netscape, where, in collaboration with Tim Bray, he adapted MCF to use XML and created the first version of the Resource Description Framework (RDF). == MCF format == An MCF file consists of one or more blocks, each corresponding to an entity. A block looks like this:The identifier is a unique identifier for that entity (more on the scope of the identifier below) and is used to refer to that entity. The following lines each specify a property and one or more values, separated by commas. Each value can be a reference to another entity (via its identifier), a string (enclosed by double quotes) or a number. For example:NOTE: The identifier must not include a comma (,) and must not be enclosed within double quotes. A common parsing failure is due to odd number of unescaped double quotes in text. For instance, "foo bar" baz" needs to be "foo bar\" baz". Commas within double quotes are not considered as value separators. Every entity has at least one property: typeOf.
SPL notation
SPL (Sentence Plan Language) is an abstract notation representing the semantics of a sentence in natural language. In a classical Natural Language Generation (NLG) workflow, an initial text plan (hierarchically or sequentially organized factoids, often modelled in accordance with Rhetorical Structure Theory) is transformed by a sentence planner (generator) component to a sequence of sentence plans modelled in a Sentence Plan Language. A surface generator can be used to transform the SPL notation into natural language sentences. Probably the most widely used SPL language used today (2022) is AMR (Abstract Meaning Representation, see there for further references), but is owes parts of its popularity to its application to NLP problems other than NLG, e.g., machine translation and semantic parsing.
Algorithmic Puzzles
Algorithmic Puzzles is a book of puzzles based on computational thinking. It was written by computer scientists Anany and Maria Levitin, and published in 2011 by Oxford University Press. == Topics == The book begins with a "tutorial" introducing classical algorithm design techniques including backtracking, divide-and-conquer algorithms, and dynamic programming, methods for the analysis of algorithms, and their application in example puzzles. The puzzles themselves are grouped into three sets of 50 puzzles, in increasing order of difficulty. A final two chapters provide brief hints and more detailed solutions to the puzzles, with the solutions forming the majority of pages of the book. Some of the puzzles are well known classics, some are variations of known puzzles making them more algorithmic, and some are new. They include: Puzzles involving chessboards, including the eight queens puzzle, knight's tours, and the mutilated chessboard problem Balance puzzles River crossing puzzles The Tower of Hanoi Finding the missing element in a data stream The geometric median problem for Manhattan distance == Audience and reception == The puzzles in the book cover a wide range of difficulty, and in general do not require more than a high school level of mathematical background. William Gasarch notes that grouping the puzzles only by their difficulty and not by their themes is actually an advantage, as it provides readers with fewer clues about their solutions. Reviewer Narayanan Narayanan recommends the book to any puzzle aficionado, or to anyone who wants to develop their powers of algorithmic thinking. Reviewer Martin Griffiths suggests another group of readers, schoolteachers and university instructors in search of examples to illustrate the power of algorithmic thinking. Gasarch recommends the book to any computer scientist, evaluating it as "a delight".
PureXML
pureXML is the native XML storage feature in the IBM Db2 data server. pureXML provides query languages, storage technologies, indexing technologies, and other features to support XML data. The word pure in pureXML was chosen to indicate that Db2 natively stores and natively processes XML data in its inherent hierarchical structure, as opposed to treating XML data as plain text or converting it into a relational format. == Technical information == Db2 includes two distinct storage mechanisms: one for efficiently managing traditional SQL data types, and another for managing XML data. The underlying storage mechanism is transparent to users and applications; they simply use SQL (including SQL with XML extensions or SQL/XML) or XQuery to work with the data. XML data is stored in columns of Db2 tables that have the XML data type. XML data is stored in a parsed format that reflects the hierarchical nature of the original XML data. As such, pureXML uses trees and nodes as its model for storing and processing XML data. If you instruct Db2 to validate XML data against an XML schema prior to storage, Db2 annotates all nodes in the XML hierarchy with information about the schema types; otherwise, it will annotate the nodes with default type information. Upon storage, Db2 preserves the internal structure of XML data, converting its tag names and other information into integer values. Doing so helps conserve disk space and also improves the performance of queries that use navigational expressions. However, users aren't aware of this internal representation. Finally, Db2 automatically splits XML nodes across multiple database pages, as needed. XML schemas specify which XML elements are valid, in what order these elements should appear in XML data, which XML data types are associated with each element, and so on. pureXML allows you to validate the cells in a column of XML data against no schema, one schema, or multiple schemas. pureXML also provides tools to support evolving XML schemas. IBM has enhanced its programming language interfaces to support access to its XML data. These enhancements span Java (JDBC), C (embedded SQL and call-level interface), COBOL (embedded SQL), PHP, and Microsoft's .NET Framework (through the DB2.NET provider). == History == pureXML was first included in the DB2 9 for Linux, Unix, and Microsoft Windows release, which was codenamed Viper, in June 2006. It was available on DB2 9 for z/OS in March 2007. In October 2007, IBM released DB2 9.5 with improved XML data transaction performance and improved storage savings. In June 2009, IBM released DB2 9.7 with XML supported for database-partitioned, range-partitioned, and multi-dimensionally clustered tables as well as compression of XML data and indices. == Competition == Db2 is a hybrid data server—it offers data management for traditional relational data, as well as providing native XML data management. Other vendors that offer data management for both relational data and native XML storage include Oracle with its 11g product and Microsoft with its SQL Server product. pureXML also competes with native XML databases like BaseX, eXist, MarkLogic or Sedna. == Books == IBM International Technical Support Organization (ITSO) has published the following books, which are available in print or as free e-books: DB2 9: pureXML Overview and Fast Start DB2 9 pureXML Guide The following books are also available for purchase: DB2 pureXML Cookbook: Master the Power of IBM Hybrid Data Server == Education and training == The following pureXML classroom and online courses are available from IBM Education: Query and Manage XML Data with DB2 9. IBM course CG130. Classroom. Duration: 4 days. Query XML Data with DB2 9. IBM course CG100. Classroom. Duration: 2 days (first 2 days of CG130). Managing XML Data in DB2 9. IBM course CG160. Classroom. Duration: 2 days (last 2 days of CG130). DB2 pureXML. IBM Course CT140. Self-paced study plus Live Virtual Classroom.
SciDB
SciDB is a column-oriented database management system (DBMS) designed for multidimensional data management and analytics common to scientific, geospatial, financial, and industrial applications. It is developed by Paradigm4 and co-created by Michael Stonebraker. == History == Stonebraker claims that arrays are 100 times faster in SciDB than in a relational DBMS on a class of problems. It is swapping rows and columns for mathematical arrays that put fewer restrictions on the data and can work in any number of dimensions unlike the conventionally widely used relational database management system model, in which each relation supports only one dimension of records. A 2011 conference presentation on SciDB promoted it as "not Hadoop". Marilyn Matz became chief executive Paradigm4 in 2014.
ROCm
ROCm is an Advanced Micro Devices (AMD) software stack for graphics processing unit (GPU) programming. ROCm spans several domains, including general-purpose computing on graphics processing units (GPGPU), high performance computing (HPC), and heterogeneous computing. It offers several programming models: HIP (GPU-kernel-based programming), OpenMP (directive-based programming), and OpenCL. ROCm is free, libre and open-source software (except the GPU firmware blobs), and it is distributed under various licenses. The name initially stood for Radeon Open Compute platform; however, due to Open Compute being a registered trademark, the name no longer functions as an acronym. == Background == The first GPGPU software stack from ATI/AMD was Close to Metal, which became Stream. ROCm was launched around 2016 with the Boltzmann Initiative. ROCm stack builds upon previous AMD GPU stacks; some tools trace back to GPUOpen and others to the Heterogeneous System Architecture (HSA). === Heterogeneous System Architecture Intermediate Language === HSAIL was aimed at producing a middle-level, hardware-agnostic intermediate representation that could be JIT-compiled to the eventual hardware (GPU, FPGA...) using the appropriate finalizer. This approach was dropped for ROCm: now it builds only GPU code, using LLVM, and its AMDGPU backend that was upstreamed, although there is still research on such enhanced modularity with LLVM MLIR. == Programming abilities == ROCm as a stack ranges from the kernel driver to the end-user applications. AMD has introductory videos about AMD GCN hardware, and ROCm programming via its learning portal. One of the best technical introductions about the stack and ROCm/HIP programming, remains, to date, to be found on Reddit. == Hardware support == ROCm is primarily targeted at discrete professional GPUs, but consumer GPUs and APUs of the same architecture as a supported professional GPU are known to work with ROCm. For example, all professional GPUs of the RDNA 2 architecture are officially supported by ROCm 5.x; users report that Consumer RDNA2 units such as the Radeon 6800M APU and the Radeon 6700XT GPU also work. === Professional-grade GPUs === === Consumer-grade GPUs === == Software ecosystem == === Machine learning === Various deep learning frameworks have a ROCm backend: PyTorch TensorFlow ONNX MXNet CuPy MIOpen Caffe Iree (which uses LLVM Multi-Level Intermediate Representation (MLIR)) llama.cpp === Supercomputing === ROCm is gaining significant traction in the top 500. ROCm is used with the Exascale supercomputers El Capitan and Frontier. Some related software is to be found at AMD Infinity hub. === Other acceleration & graphics interoperation === As of version 3.0, Blender can now use HIP compute kernels for its renderer cycles. === Other languages === ==== Julia ==== Julia has the AMDGPU.jl package, which integrates with LLVM and selects components of the ROCm stack. Instead of compiling code through HIP, AMDGPU.jl uses Julia's compiler to generate LLVM IR directly, which is later consumed by LLVM to generate native device code. AMDGPU.jl uses ROCr's HSA implementation to upload native code onto the device and execute it, similar to how HIP loads its own generated device code. AMDGPU.jl also supports integration with ROCm's rocBLAS (for BLAS), rocRAND (for random number generation), and rocFFT (for FFTs). Future integration with rocALUTION, rocSOLVER, MIOpen, and certain other ROCm libraries is planned. === Software distribution === ==== Official ==== Installation instructions are provided for Linux and Windows in the official AMD ROCm documentation. ROCm software is currently spread across several public GitHub repositories. Within the main public meta-repository, there is an XML manifest for each official release: using git-repo, a version control tool built on top of Git, is the recommended way to synchronize with the stack locally. AMD starts distributing containerized applications for ROCm, notably scientific research applications gathered under AMD Infinity Hub. AMD distributes itself packages tailored to various Linux distributions. ==== Third-party ==== There is a growing third-party ecosystem packaging ROCm. Linux distributions are officially packaging (natively) ROCm, with various degrees of advancement: Arch Linux, Gentoo, Debian, Fedora , GNU Guix, and NixOS. There are Spack packages. == Components == There is one kernel-space component, ROCk, and the rest - there is roughly a hundred components in the stack - is made of user-space modules. The unofficial typographic policy is to use: uppercase ROC lowercase following for low-level libraries, i.e. ROCt, and the contrary for user-facing libraries, i.e. rocBLAS. AMD is active developing with the LLVM community, but upstreaming is not instantaneous, and as of January 2022, is still lagging. AMD still officially packages various LLVM forks for parts that are not yet upstreamed – compiler optimizations destined to remain proprietary, debug support, OpenMP offloading, etc. === Low-level === ==== ROCk – Kernel driver ==== ==== ROCm – Device libraries ==== Support libraries implemented as LLVM bitcode. These provide various utilities and functions for math operations, atomics, queries for launch parameters, on-device kernel launch, etc. ==== ROCt – Thunk ==== The thunk is responsible for all the thinking and queuing that goes into the stack. ==== ROCr – Runtime ==== The ROC runtime is a set of APIs/libraries that allows the launch of compute kernels by host applications. It is AMD's implementation of the HSA runtime API. It is different from the ROC Common Language Runtime. ==== ROCm – CompilerSupport ==== ROCm code object manager is in charge of interacting with LLVM intermediate representation. === Mid-level === ==== ROCclr Common Language Runtime ==== The common language runtime is an indirection layer adapting calls to ROCr on Linux and PAL on windows. It used to be able to route between different compilers, like the HSAIL-compiler. It is now being absorbed by the upper indirection layers (HIP and OpenCL). ==== OpenCL ==== ROCm ships its installable client driver (ICD) loader and an OpenCL implementation bundled together. As of January 2022, ROCm 4.5.2 ships OpenCL 2.2, and is lagging behind competition. ==== HIP – Heterogeneous Interface for Portability ==== The AMD implementation for its GPUs is called HIPAMD. There is also a CPU implementation mostly for demonstration purposes. ==== HIPCC ==== HIP builds a `HIPCC` compiler that either wraps Clang and compiles with LLVM open AMDGPU backend, or redirects to the NVIDIA compiler. ==== HIPIFY ==== HIPIFY is a source-to-source compiling tool. It translates CUDA to HIP and reverse, either using a Clang-based tool, or a sed-like Perl script. ==== GPUFORT ==== Like HIPIFY, GPUFORT is a tool compiling source code into other third-generation-language sources, allowing users to migrate from CUDA Fortran to HIP Fortran. It is also in the repertoire of research projects, even more so. === High-level === ROCm high-level libraries are usually consumed directly by application software, such as machine learning frameworks. Most of the following libraries are in the General Matrix Multiply (GEMM) category, which GPU architecture excels at. The majority of these user-facing libraries comes in dual-form: hip for the indirection layer that can route to Nvidia hardware, and roc for the AMD implementation. ==== rocBLAS / hipBLAS ==== rocBLAS and hipBLAS are central in high-level libraries, it is the AMD implementation for Basic Linear Algebra Subprograms. It uses the library Tensile privately. ==== rocSOLVER / hipSOLVER ==== This pair of libraries constitutes the LAPACK implementation for ROCm and is strongly coupled to rocBLAS. === Utilities === ROCm developer tools: Debug, tracer, profiler, System Management Interface, Validation suite, Cluster management. GPUOpen tools: GPU analyzer, memory visualizer... External tools: radeontop (TUI overview) == Comparison with competitors == ROCm competes with other GPU computing stacks: Nvidia CUDA and Intel OneAPI. === Nvidia CUDA === Nvidia's CUDA is closed-source, whereas AMD ROCm is open source. There is open-source software built on top of the closed-source CUDA, for instance RAPIDS. CUDA is able to run on consumer GPUs, whereas ROCm support is mostly offered for professional hardware such as AMD Instinct and AMD Radeon Pro. Nvidia provides a C/C++-centered frontend and its Parallel Thread Execution (PTX) LLVM GPU backend as the Nvidia CUDA Compiler (NVCC). === Intel OneAPI === All the oneAPI corresponding libraries are published on its GitHub Page. ==== Unified Acceleration Foundation (UXL) ==== Unified Acceleration Foundation (UXL) is a new technology consortium that are working on the continuation of the OneAPI initiative, with the goal to create a new open standard accelerator software ecosystem, related open standards and specification projects through Working Groups and Specia
Umbrella review
In medical research, an umbrella review is a review of systematic reviews or meta-analyses. They may also be called overviews of reviews, reviews of reviews, summaries of systematic reviews, or syntheses of reviews. Umbrella reviews are among the highest levels of evidence currently available in medicine. By summarizing information from multiple overview articles, umbrella reviews make it easier to review the evidence and allow for comparison of results between each of the individual reviews. Umbrella reviews may address a broader question than a typical review, such as discussing multiple different treatment comparisons instead of only one. They are especially useful for developing guidelines and clinical practice, and when comparing competing interventions.