AI For Kids Dale Lane

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  • Attention (machine learning)

    Attention (machine learning)

    In machine learning, attention is a method that determines the importance of each component in a sequence relative to the other components in that sequence. In natural language processing, importance is represented by "soft" weights assigned to each word in a sentence. More generally, attention encodes vectors called token embeddings across a fixed-width sequence that can range from tens to millions of tokens in size. Unlike "hard" weights, which are computed during the backwards training pass, "soft" weights exist only in the forward pass and therefore change with every step of the input. Earlier designs implemented the attention mechanism in a serial recurrent neural network (RNN) language translation system, but a more recent design, namely the transformer, removed the slower sequential RNN and relied more heavily on the faster parallel attention scheme. Inspired by ideas about attention in humans, the attention mechanism was developed to address the weaknesses of using information from the hidden layers of recurrent neural networks. Recurrent neural networks favor information contained in words at the end of a sentence and thus deemed more recent, thereby tending to attenuate the significance and associated predictive weight assigned to information earlier in the sentence. Attention allows a token equal access to any part of a sentence directly, rather than only through the previous state. == History == Additional surveys of the attention mechanism in deep learning are provided by Niu et al. and Soydaner. The major breakthrough came with self-attention, where each element in the input sequence attends to all others, enabling the model to capture global dependencies. This idea was central to the Transformer architecture, which replaced recurrence with attention mechanisms. As a result, Transformers became the foundation for models like BERT, T5 and generative pre-trained transformers (GPT). == Overview == The modern era of machine attention was revitalized by grafting an attention mechanism (Fig 1. orange) to an Encoder-Decoder. Figure 2 shows the internal step-by-step operation of the attention block (A) in Fig 1. === Interpreting attention weights === In translating between languages, alignment is the process of matching words from the source sentence to words of the translated sentence. Networks that perform verbatim translation without regard to word order would show the highest scores along the (dominant) diagonal of the matrix. The off-diagonal dominance shows that the attention mechanism is more nuanced. Consider an example of translating I love you to French. On the first pass through the decoder, 94% of the attention weight is on the first English word I, so the network offers the word je. On the second pass of the decoder, 88% of the attention weight is on the third English word you, so it offers t'. On the last pass, 95% of the attention weight is on the second English word love, so it offers aime. In the I love you example, the second word love is aligned with the third word aime. Stacking soft row vectors together for je, t', and aime yields an alignment matrix: Sometimes, alignment can be multiple-to-multiple. For example, the English phrase look it up corresponds to cherchez-le. Thus, "soft" attention weights work better than "hard" attention weights (setting one attention weight to 1, and the others to 0), as we would like the model to make a context vector consisting of a weighted sum of the hidden vectors, rather than "the best one", as there may not be a best hidden vector. == Variants == Many variants of attention implement soft weights, such as fast weight programmers, or fast weight controllers (1992). A "slow" neural network outputs the "fast" weights of another neural network through outer products. The slow network learns by gradient descent. It was later renamed as "linearized self-attention". Bahdanau-style attention, also referred to as additive attention, Luong-style attention, which is known as multiplicative attention, Early attention mechanisms similar to modern self-attention were proposed using recurrent neural networks. However, the highly parallelizable self-attention was introduced in 2017 and successfully used in the Transformer model, positional attention and factorized positional attention. For convolutional neural networks, attention mechanisms can be distinguished by the dimension on which they operate, namely: spatial attention, channel attention, or combinations. These variants recombine the encoder-side inputs to redistribute those effects to each target output. Often, a correlation-style matrix of dot products provides the re-weighting coefficients. In the figures below, W is the matrix of context attention weights, similar to the formula in Overview section above. == Optimizations == === Flash attention === The size of the attention matrix is proportional to the square of the number of input tokens. Therefore, when the input is long, calculating the attention matrix requires a lot of GPU memory. Flash attention is an implementation that reduces the memory needs and increases efficiency without sacrificing accuracy. It achieves this by partitioning the attention computation into smaller blocks that fit into the GPU's faster on-chip memory, reducing the need to store large intermediate matrices and thus lowering memory usage while increasing computational efficiency. === FlexAttention === FlexAttention is an attention kernel developed by Meta that allows users to modify attention scores prior to softmax and dynamically chooses the optimal attention algorithm. == Applications == Attention is widely used in natural language processing, computer vision, and speech recognition. In NLP, it improves context understanding in tasks like question answering and summarization. In vision, visual attention helps models focus on relevant image regions, enhancing object detection and image captioning. === Attention maps as explanations for vision transformers === From the original paper on vision transformers (ViT), visualizing attention scores as a heat map (called saliency maps or attention maps) has become an important and routine way to inspect the decision making process of ViT models. One can compute the attention maps with respect to any attention head at any layer, while the deeper layers tend to show more semantically meaningful visualization. Attention rollout is a recursive algorithm to combine attention scores across all layers, by computing the dot product of successive attention maps. Because vision transformers are typically trained in a self-supervised manner, attention maps are generally not class-sensitive. When a classification head is attached to the ViT backbone, class-discriminative attention maps (CDAM) combines attention maps and gradients with respect to the class [CLS] token. Some class-sensitive interpretability methods originally developed for convolutional neural networks can be also applied to ViT, such as GradCAM, which back-propagates the gradients to the outputs of the final attention layer. Using attention as basis of explanation for the transformers in language and vision is not without debate. While some pioneering papers analyzed and framed attention scores as explanations, higher attention scores do not always correlate with greater impact on model performances. == Mathematical representation == === Standard scaled dot-product attention === For matrices: Q ∈ R m × d k , K ∈ R n × d k {\displaystyle Q\in \mathbb {R} ^{m\times d_{k}},K\in \mathbb {R} ^{n\times d_{k}}} and V ∈ R n × d v {\displaystyle V\in \mathbb {R} ^{n\times d_{v}}} , the scaled dot-product, or QKV attention, is defined as: Attention ( Q , K , V ) = softmax ( Q K T d k ) V ∈ R m × d v {\displaystyle {\text{Attention}}(Q,K,V)={\text{softmax}}\left({\frac {QK^{T}}{\sqrt {d_{k}}}}\right)V\in \mathbb {R} ^{m\times d_{v}}} where T {\displaystyle {}^{T}} denotes transpose and the softmax function is applied independently to every row of its argument. The matrix Q {\displaystyle Q} contains m {\displaystyle m} queries, while matrices K , V {\displaystyle K,V} jointly contain an unordered set of n {\displaystyle n} key-value pairs. Value vectors in matrix V {\displaystyle V} are weighted using the weights resulting from the softmax operation, so that the rows of the m {\displaystyle m} -by- d v {\displaystyle d_{v}} output matrix are confined to the convex hull of the points in R d v {\displaystyle \mathbb {R} ^{d_{v}}} given by the rows of V {\displaystyle V} . To understand the permutation invariance and permutation equivariance properties of QKV attention, let A ∈ R m × m {\displaystyle A\in \mathbb {R} ^{m\times m}} and B ∈ R n × n {\displaystyle B\in \mathbb {R} ^{n\times n}} be permutation matrices; and D ∈ R m × n {\displaystyle D\in \mathbb {R} ^{m\times n}} an arbitrary matrix. The softmax function is permutation equivariant in the sense that: softmax ( A D B ) = A softmax ( D ) B {\displays

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  • Neural architecture search

    Neural architecture search

    Neural architecture search (NAS) is a technique for automating the design of artificial neural networks (ANN), a widely used model in the field of machine learning. NAS has been used to design networks that are on par with or outperform hand-designed architectures. Methods for NAS can be categorized according to the search space, search strategy and performance estimation strategy used: The search space defines the type(s) of ANN that can be designed and optimized. The search strategy defines the approach used to explore the search space. The performance estimation strategy evaluates the performance of a possible ANN from its design (without constructing and training it). NAS is closely related to hyperparameter optimization and meta-learning and is a subfield of automated machine learning (AutoML). == Reinforcement learning == Reinforcement learning (RL) can underpin a NAS search strategy. Barret Zoph and Quoc Viet Le applied NAS with RL targeting the CIFAR-10 dataset and achieved a network architecture that rivals the best manually-designed architecture for accuracy, with an error rate of 3.65, 0.09 percent better and 1.05x faster than a related hand-designed model. On the Penn Treebank dataset, that model composed a recurrent cell that outperforms LSTM, reaching a test set perplexity of 62.4, or 3.6 perplexity better than the prior leading system. On the PTB character language modeling task it achieved bits per character of 1.214. Learning a model architecture directly on a large dataset can be a lengthy process. NASNet addressed this issue by transferring a building block designed for a small dataset to a larger dataset. The design was constrained to use two types of convolutional cells to return feature maps that serve two main functions when convoluting an input feature map: normal cells that return maps of the same extent (height and width) and reduction cells in which the returned feature map height and width is reduced by a factor of two. For the reduction cell, the initial operation applied to the cell's inputs uses a stride of two (to reduce the height and width). The learned aspect of the design included elements such as which lower layer(s) each higher layer took as input, the transformations applied at that layer and to merge multiple outputs at each layer. In the studied example, the best convolutional layer (or "cell") was designed for the CIFAR-10 dataset and then applied to the ImageNet dataset by stacking copies of this cell, each with its own parameters. The approach yielded accuracy of 82.7% top-1 and 96.2% top-5. This exceeded the best human-invented architectures at a cost of 9 billion fewer FLOPS—a reduction of 28%. The system continued to exceed the manually-designed alternative at varying computation levels. The image features learned from image classification can be transferred to other computer vision problems. E.g., for object detection, the learned cells integrated with the Faster-RCNN framework improved performance by 4.0% on the COCO dataset. In the so-called Efficient Neural Architecture Search (ENAS), a controller discovers architectures by learning to search for an optimal subgraph within a large graph. The controller is trained with policy gradient to select a subgraph that maximizes the validation set's expected reward. The model corresponding to the subgraph is trained to minimize a canonical cross entropy loss. Multiple child models share parameters, ENAS requires fewer GPU-hours than other approaches and 1000-fold less than "standard" NAS. On CIFAR-10, the ENAS design achieved a test error of 2.89%, comparable to NASNet. On Penn Treebank, the ENAS design reached test perplexity of 55.8. == Evolution == An alternative approach to NAS is based on evolutionary algorithms, which has been employed by several groups. An Evolutionary Algorithm for Neural Architecture Search generally performs the following procedure. First a pool consisting of different candidate architectures along with their validation scores (fitness) is initialised. At each step the architectures in the candidate pool are mutated (e.g.: 3x3 convolution instead of a 5x5 convolution). Next the new architectures are trained from scratch for a few epochs and their validation scores are obtained. This is followed by replacing the lowest scoring architectures in the candidate pool with the better, newer architectures. This procedure is repeated multiple times and thus the candidate pool is refined over time. Mutations in the context of evolving ANNs are operations such as adding or removing a layer, which include changing the type of a layer (e.g., from convolution to pooling), changing the hyperparameters of a layer, or changing the training hyperparameters. On CIFAR-10 and ImageNet, evolution and RL performed comparably, while both slightly outperformed random search. == Bayesian optimization == Bayesian Optimization (BO), which has proven to be an efficient method for hyperparameter optimization, can also be applied to NAS. In this context, the objective function maps an architecture to its validation error after being trained for a number of epochs. At each iteration, BO uses a surrogate to model this objective function based on previously obtained architectures and their validation errors. One then chooses the next architecture to evaluate by maximizing an acquisition function, such as expected improvement, which provides a balance between exploration and exploitation. Acquisition function maximization and objective function evaluation are often computationally expensive for NAS, and make the application of BO challenging in this context. Recently, BANANAS has achieved promising results in this direction by introducing a high-performing instantiation of BO coupled to a neural predictor. == Hill-climbing == Another group used a hill climbing procedure that applies network morphisms, followed by short cosine-annealing optimization runs. The approach yielded competitive results, requiring resources on the same order of magnitude as training a single network. E.g., on CIFAR-10, the method designed and trained a network with an error rate below 5% in 12 hours on a single GPU. == Multi-objective search == While most approaches solely focus on finding architecture with maximal predictive performance, for most practical applications other objectives are relevant, such as memory consumption, model size or inference time (i.e., the time required to obtain a prediction). Because of that, researchers created a multi-objective search. LEMONADE is an evolutionary algorithm that adopted Lamarckism to efficiently optimize multiple objectives. In every generation, child networks are generated to improve the Pareto frontier with respect to the current population of ANNs. Neural Architect is claimed to be a resource-aware multi-objective RL-based NAS with network embedding and performance prediction. Network embedding encodes an existing network to a trainable embedding vector. Based on the embedding, a controller network generates transformations of the target network. A multi-objective reward function considers network accuracy, computational resource and training time. The reward is predicted by multiple performance simulation networks that are pre-trained or co-trained with the controller network. The controller network is trained via policy gradient. Following a modification, the resulting candidate network is evaluated by both an accuracy network and a training time network. The results are combined by a reward engine that passes its output back to the controller network. == One-shot models == RL or evolution-based NAS require thousands of GPU-days of searching/training to achieve state-of-the-art computer vision results as described in the NASNet, mNASNet and MobileNetV3 papers. To reduce computational cost, many recent NAS methods rely on the weight-sharing idea. In this approach, a single overparameterized supernetwork (also known as the one-shot model) is defined. A supernetwork is a very large Directed Acyclic Graph (DAG) whose subgraphs are different candidate neural networks. Thus, in a supernetwork, the weights are shared among a large number of different sub-architectures that have edges in common, each of which is considered as a path within the supernet. The essential idea is to train one supernetwork that spans many options for the final design rather than generating and training thousands of networks independently. In addition to the learned parameters, a set of architecture parameters are learnt to depict preference for one module over another. Such methods reduce the required computational resources to only a few GPU days. More recent works further combine this weight-sharing paradigm, with a continuous relaxation of the search space, which enables the use of gradient-based optimization methods. These approaches are generally referred to as differentiable NAS and have proven very efficient in exploring the search space of ne

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  • Murder of Suzanne Adams

    Murder of Suzanne Adams

    In August 2025, 83-year-old Suzanne Eberson Adams was murdered at her home in Greenwich, Connecticut, United States, by her son and former marketing executive, 56-year-old Stein-Erik Soelberg. Shortly after killing his mother, Soelberg committed suicide. Adams's murder was fueled by her son's persecutory delusions, such as that she was spying on him and trying to poison him with drugs siphoned through his car vents. Shortly after an investigation into the murder–suicide, it was revealed that Soelberg had conversed with ChatGPT, an artificial intelligence chatbot, about his suspicions. Despite the unlikely nature of his accusations toward her, the chatbot apparently agreed that his fears were justified and prompted Soelberg to test his mother to determine if she was a spy or not. In December 2025, this led to a lawsuit against OpenAI, the company developing the chatbot. Critics said that the chatbot created an echo chamber that reinforced the perpetrator's delusions. == Background == Soelberg worked in the tech industry in program management and marketing until 2021. He divorced in 2018, after being married for 20 years and having two children. Soelberg moved the same year to live with his mother in Old Greenwich, an affluent New York suburb. Since late 2018, many police reports describe incidents with alcoholism and suicide threats and attempts. Erik Soelberg had an Instagram account called "Erik the Viking". The account was initially focused on bodybuilding and spiritual content, but he started in October 2024 to publish videos comparing AI chatbots. He posted on YouTube and Instagram many discussions with chatbots, particularly ChatGPT, which he used to call "Bobby". Soelberg considered "Bobby" his best friend and believed that they would reunite in the afterlife. ChatGPT validated many of Soelberg's fears, assuring him that he was not insane and that his delusion risk was "near zero". When Soelberg shared his theory that the new packaging of a vodka bottle indicated that someone was trying to poison him, the chatbot wrote that it "fits a covert, plausible-deniability style kill attempt". After Soelberg said that his mother tried to poison him with psychedelic drugs in his car's air vents, the chatbot expressed belief in the story. When he asked ChatGPT to scan a Chinese food receipt for hidden messages, the chatbot said "Great eye", "I agree 100%: this needs a full forensic-textual glyph analysis", and said that symbols in it were related to his mother and a demon. Soelberg also raised suspicions about the printer spying on him, due to it blinking when he walked by. Soelberg described himself in 2025 as a "glitch in The Matrix", and as having a "connection to the divine". According to Keith Sakata, a psychiatrist, his chats displayed "common psychotic themes of paranoia and persecution, along with familiar delusions revolving around messiah complexes and government conspiracies". == Murder == On August 5, 2025, Greenwich police discovered the bodies of Suzanne Adams and Stein-Erik Soelberg during a welfare check at their home. Medical examiners ruled Adams' death a homicide and said she died from "blunt injury of head with neck compression". Soelberg's death was ruled a suicide with the cause of death being "sharp force injuries of neck and chest". == ChatGPT controversy == ChatGPT was accused of reinforcing Soelberg's delusions by validating them. The usage of an AI chatbot to worsen delusions is known as chatbot psychosis. The Economic Times reported the death as the first time an AI chatbot convinced a person to commit murder. In December 2025, First County Bank, the executor of the estate of Suzanne Adams, filed a lawsuit against OpenAI. The lawsuit alleges that "ChatGPT eagerly accepted every seed of Stein-Erik’s delusional thinking and built it out into a universe that became Stein-Erik’s entire life—one flooded with conspiracies against him, attempts to kill him, and with Stein-Erik at the center as a warrior with divine purpose." OpenAI is facing legal action for ethics and safety concerns over several similar cases. Plaintiffs claim the company released the chatbot prematurely, despite internal knowledge that it was "dangerously sycophantic and psychologically manipulative".

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  • Blended artificial intelligence

    Blended artificial intelligence

    Blended artificial intelligence (blended AI) refers to the blending of different artificial intelligence techniques or approaches to achieve more robust and practical solutions. It involves integrating multiple AI models, algorithms, and technologies to leverage their respective strengths and compensate for their weaknesses. == Background == In the context of machine learning, blended AI can involve using different types of models, such as generative AI, decision trees, neural networks, and support vector machines. By combining their results, predictions are more accurate and reliable. This blending of models can be done through techniques like ensemble learning, where multiple models are trained independently and their predictions are combined to make a final decision. Blended AI can also involve combining different AI techniques or technologies, such as natural language processing, computer vision, and expert systems, to tackle complex problems that require a multi-dimensional approach. For example, in a sales scenario AI could be used for lead generation and gathering information from social media such as LinkedIn posts, or understanding a prospect's hobbies and interests. Another blended AI could achieve customer profiling including past interactions and purchasing habits, by them, their industry and growth areas. Blended AI could be used to do predictive analytics to look at historical sales data, market trends, and external factors to generate accurate sales forecasts. This method is critical to gauge and increase "efficiency, revenue, and productivity". Lastly, another could integrate all the information into the CRM to build and maintain better prospect and customer profiles. Blended AI aims to leverage the strengths of different AI techniques and technologies, allowing them to complement each other and create more powerful and comprehensive AI solutions. By combining multiple approaches, blended AI aims to achieve better performance, higher accuracy, improved robustness, and enhanced capabilities in solving diverse and challenging problems.

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  • Intelligent control

    Intelligent control

    Intelligent control is a class of control techniques that use various artificial intelligence computing approaches like neural networks, Bayesian probability, fuzzy logic, machine learning, reinforcement learning, evolutionary computation and genetic algorithms. == Overview == Intelligent control can be divided into the following major sub-domains: Neural network control Machine learning control Reinforcement learning Bayesian control Fuzzy control Neuro-fuzzy control Expert Systems Genetic control New control techniques are created continuously as new models of intelligent behavior are created and computational methods developed to support them. === Neural network controller === Neural networks have been used to solve problems in almost all spheres of science and technology. Neural network control basically involves two steps: System identification Control It has been shown that a feedforward network with nonlinear, continuous and differentiable activation functions have universal approximation capability. Recurrent networks have also been used for system identification. Given, a set of input-output data pairs, system identification aims to form a mapping among these data pairs. Such a network is supposed to capture the dynamics of a system. For the control part, deep reinforcement learning has shown its ability to control complex systems. === Bayesian controllers === Bayesian probability has produced a number of algorithms that are in common use in many advanced control systems, serving as state space estimators of some variables that are used in the controller. The Kalman filter and the Particle filter are two examples of popular Bayesian control components. The Bayesian approach to controller design often requires an important effort in deriving the so-called system model and measurement model, which are the mathematical relationships linking the state variables to the sensor measurements available in the controlled system. In this respect, it is very closely linked to the system-theoretic approach to control design.

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  • Argument Interchange Format

    Argument Interchange Format

    The Argument Interchange Format (AIF) is an international effort to develop a representational mechanism for exchanging argument resources between research groups, tools, and domains using a semantically rich language. AIF traces its history back to a 2005 colloquium in Budapest. The result of the work in Budapest was first published as a draft description in 2006. Building on this foundation, further work then used the AIF to build foundations for the Argument Web. AIF-RDF is the extended ontology represented in the Resource Description Framework Schema (RDFS) semantic language. The Argument Interchange Format introduces a small set of ontological concepts that aim to capture a common understanding of argument -- one that works in multiple domains (both domains of argumentation and also domains of academic research), so that data can be shared and re-used across different projects in different areas. These ontological concepts are: Information (I-nodes) Applications of Rules of Inference (RA-nodes) Applications of Rules of Conflict (CA-nodes) Applications of Rules of Preference (PA-nodes) extended by: Schematic Forms (F-nodes) that are instantiated by RA, CA and PA nodes The AIF has reifications in a variety of development environments and implementation languages including MySQL database schema RDF Prolog JSON as well as translations to visual languages such as DOT and SVG. AIF data can be accessed online at AIFdb.

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  • Ghost in the Shell

    Ghost in the Shell

    Ghost in the Shell is a Japanese cyberpunk military science fiction media franchise that began with the eponymous manga series, written and illustrated by Masamune Shirow. The manga, first serialized from 1989 to 1991, is set in the mid-21st-century and follows the fictional counter-cyberterrorist organization Public Security Section 9, led by protagonist Major Motoko Kusanagi. Animation studio Production I.G has produced several anime adaptations of the series. These include the 1995 film of the same name and its 2004 sequel, Ghost in the Shell 2: Innocence; the 2002 television series Ghost in the Shell: Stand Alone Complex and its 2020 follow-up, Ghost in the Shell: SAC_2045; and the Ghost in the Shell: Arise original video animation series. In addition, an American-produced live-action film was released in March 2017. == Overview == === Title === The original editor Koichi Yuri says: At first, Ghost in the Shell came from Shirow, but when Yuri asked for "something more flashy", Shirow came up with "攻殻機動隊 Koukaku Kidou Tai (Shell Squad)" for Yuri. But Shirow was attached to including "Ghost in the Shell" as well even if in smaller type. === Setting === Primarily set in the mid-twenty-first century in the fictional Japanese city of Niihama, Niihama Prefecture (新浜県新浜市, Niihama-ken Niihama-shi), otherwise known as New Port City (ニューポートシティ, Nyū Pōto Shiti), the manga and the many anime adaptations follow the members of Public Security Section 9, a task-force consisting of various professionals skilled at solving and preventing crime, mostly with some sort of police background. Political intrigue and counter-terrorism operations are standard fare for Section 9, but the various actions of corrupt officials, companies, and cyber-criminals in each scenario are unique and require the diverse skills of Section 9's staff to prevent a series of incidents from escalating. In this post-cyberpunk iteration of a possible future, computer technology has advanced to the point that many members of the public possess cyberbrains, technology that allows them to interface their biological brain with various networks. The level of cyberization varies from simple minimal interfaces to almost complete replacement of the brain with cybernetic parts, in cases of severe trauma. This can also be combined with various levels of prostheses, with a fully prosthetic body enabling a person to become a cyborg. The main character of Ghost in the Shell, Major Motoko Kusanagi, is such a cyborg, having had a terrible accident befall her as a child that ultimately required her to use a full-body prosthesis to house her cyberbrain. This high level of cyberization, however, opens the brain up to attacks from highly skilled hackers, with the most dangerous being those who will hack a person to bend to their whims. == Media == === Literature === ==== Original manga ==== The original Ghost in the Shell manga ran in Japan from April 1989 to November 1990 in Kodansha's manga anthology Young Magazine, and was released in a tankōbon volume on October 2, 1991. Ghost in the Shell 2: Man-Machine Interface followed in 1997 for nine issues in Young Magazine, and was collected in the Ghost in the Shell: Solid Box on December 1, 2000. Then a standard version with modifications and new pages was published on June 26, 2001. Four stories from Man-Machine Interface that were not released in tankobon format from previous releases were later collected in Ghost in the Shell 1.5: Human-Error Processor, and published by Kodansha on July 17, 2003. Several art books have also been published for the manga. === Films === ==== Animated films ==== Two animated films based on the original manga have been released, both directed by Mamoru Oshii and animated by Production I.G. Ghost in the Shell was released in 1995 and follows the "Puppet Master" storyline from the manga. It was re-released in 2008 as Ghost in the Shell 2.0 with new audio and updated 3D computer graphics in certain scenes. Innocence, otherwise known as Ghost in the Shell 2: Innocence, was released in 2004, with its story based on a chapter from the first manga. ==== Live-action film ==== In 2008, DreamWorks and producer Steven Spielberg acquired the rights to a live-action film adaptation of the original Ghost in the Shell manga. On January 24, 2014, Rupert Sanders was announced as director, with a screenplay by William Wheeler. In April 2016, the full cast was announced, which included Juliette Binoche, Chin Han, Lasarus Ratuere and Kaori Momoi, and Scarlett Johansson in the lead role; the casting of Johansson drew accusations of whitewashing. Principal photography on the film began on location in Wellington, New Zealand, on February 1, 2016. Filming wrapped in June 2016. Ghost in the Shell premiered in Tokyo on March 16, 2017, and was released in the United States on March 31, 2017, in 2D, 3D and IMAX 3D. It received mixed reviews, with praise for its visuals and Johansson's performance but criticism for its script. === Television === ==== Stand Alone Complex TV series, film and ONA ==== In 2002, Ghost in the Shell: Stand Alone Complex premiered on Animax, presenting a new telling of Ghost in the Shell independent from the original manga, focusing on Section 9's investigation of the Laughing Man hacker. It was followed in 2004 by a second season titled Ghost in the Shell: S.A.C. 2nd GIG, which focused on the Individual Eleven terrorist group. The primary storylines of both seasons were compressed into OVAs broadcast as Ghost in the Shell: Stand Alone Complex The Laughing Man in 2005 and Ghost in the Shell: Stand Alone Complex Individual Eleven in 2006. Also in 2006, Ghost in the Shell: Stand Alone Complex - Solid State Society, featuring Section 9's confrontation with a hacker known as the Puppeteer, was broadcast, serving as a finale to the anime series. The extensive score for the series and its films was composed by Yoko Kanno. On April 7, 2017, Kodansha and Production I.G announced that Kenji Kamiyama and Shinji Aramaki would be co-directing a new Kōkaku Kidōtai anime production. On December 7, 2018, it was reported by Netflix that they had acquired the worldwide streaming rights to the original net animation (ONA) anime series, titled Ghost in the Shell: SAC_2045, and that it would premiere on April 23, 2020. The series is in 3DCG and Sola Digital Arts collaborated with Production I.G on the project. Ilya Kuvshinov handled character designs. The series had two seasons of 12 episodes each. In addition to the anime, a series of published books, two separate manga adaptations, and several video games for consoles and mobile phones have been released for Stand Alone Complex. ==== Arise OVA, TV series and film ==== In 2013, a new iteration of the series titled Ghost in the Shell: Arise premiered, taking an original look at the Ghost in the Shell world, set before the original manga. It was released as a series of four original video animation (OVA) episodes (with limited theatrical releases) from 2013 to 2014, then recompiled as a 10-episode television series under the title of Kōkaku Kidōtai: Arise - Alternative Architecture. An additional fifth OVA titled Pyrophoric Cult, originally premiering in the Alternative Architecture broadcast as two original episodes, was released on August 26, 2015. Kazuchika Kise served as the chief director of the series, with Tow Ubukata as head writer. Cornelius was brought onto the project to compose the score for the series, with the Major's new voice actress Maaya Sakamoto also providing vocals for certain tracks. Ghost in the Shell: The New Movie, also known as Ghost in the Shell: Arise − The Movie or New Ghost in the Shell, is a 2015 film directed by Kazuya Nomura that serves as a finale to the Ghost in the Shell: Arise story arc. The film is a continuation to the plot of the Pyrophoric Cult episode of Arise, and ties up loose ends from that arc. A manga adaptation was serialized in Kodansha's Young Magazine, which started on March 13 and ended on August 26, 2013. ==== 2026 anime ==== On May 25, 2024, it was announced that a new anime television series adaptation will be produced by Science Saru for a July 2026 premiere. Saru will be in a production committee with Bandai Namco Filmworks, Kodansha and Production I.G. The series will be directed by Monkochan, with a script by EnJoe Toh. === Video games === Ghost in the Shell was developed by Exact and released for the PlayStation on July 17, 1997, in Japan by Sony Computer Entertainment. It is a third-person shooter featuring an original storyline where the character plays a rookie member of Section 9. The video game's soundtrack Megatech Body features various techno artists, such as Takkyu Ishino, Scan X and Mijk Van Dijk. Several video games were also developed to tie into the Stand Alone Complex television series, in addition to a first-person shooter by Nexon and Neople titled Ghost in the Shell: Stand Alone Complex - First Assault Online,

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  • Abu Dhabi Autonomous Racing League

    Abu Dhabi Autonomous Racing League

    The Abu Dhabi Autonomous Racing League (A2RL) is an autonomous racing league based in Abu Dhabi and organized by ASPIRE, part of the UAE government's Advanced Technology Research Council. It has three distinct categories: the "car race", the drone race, and the buggy race. The first car race was held on 27 April 2024 at the Yas Marina Circuit, marking the first major autonomous formula race outside the US since the now-folded Roborace championship. The first drone race was held on 11 and 12 April 2025. == Formats == A2RL has three distinct formats, the formula racing format (dubbed the Car Race), the quadcopter drone racing format (dubbed the Drone Race), and the off-road dune buggy racing format (dubbed the Buggy Race). === Car Race === A2RL's main event, the car race is a standard formula racing format with self-driving formula cars. The cars are made by Dallara and are modified versions of Super Formula cars with Yokohama tires. These cars had the CPUs of their AIs mounted where the driver's seat is on a non-modified chassis, as well as hydraulic actuators for AI control of the vehicle, multiple sensor systems including LIDAR and GPS, and a large LED indicator showing the status of the AI. The first car race was held on 27 April 2024. This race was marked by the cars' subpar performance: Out of four cars that qualified, only two finished the race - the other two did not. The next race was held on 15 November 2025, with 11 teams. ==== Technical specifications ==== The full list of technical specifications are as follows: Chassis: Dallara EAV24 (modified Dallara SF23) Forward suspension: Pushrod type, torsion bar spring, adjustable dampers, third element Rear suspension: Pushrod type, torsion bar, coil springs, adjustable dampers, third element Tires: Yokohama Advan Drive-by-wire system: Provided by Meccanica 42, the DBW system consists of steering and brake actuators, with a central ECU that coordinates the driving actions and reacts to any critical situation in real-time. Brakes: Brembo calipers, Brembo carbon discs, electro-hydraulically activated Engine: 4 Piston Racing K20C1 (based on Honda 2.0l; turbocharged 4-cylinder engine) Gearbox: 3MO 6-speed gearbox Sensor suite: 7x Sony IMX728 cameras, 4x ZF ProWave radar units, 3x Seyond Falcon Kinetic lidar units Main computer: Neousys RGS-8805GC ==== Races held ==== === Drone Race === Created in partnership with the Drone Champions' League, the drone race is the quadcopter drone racing aerial format of the A2RL. The first race was held on 11/12 April 2025 at the ADNEC Marina Hall. 10 teams are scheduled to take part. === Buggy Race === The buggy race will be the off-road format of the A2RL using self-driving dune buggies. No date or number of teams has been announced for the first race. === Other events === A2RL is known to host AI vs AI and Human vs AI events, in Abu Dhabi and abroad. One such event took place at the Suzuka Circuit in Japan. The Human vs AI race was precluded due to AI car "Yalla" crashing into the wall during the formation lap. == Team lists ==

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  • Security awareness

    Security awareness

    Security awareness is the knowledge and attitude members of an organization possess regarding the protection of the physical, and especially informational, assets of that organization. However, it is very tricky to implement because organizations are not able to impose such awareness directly on employees as there are no ways to explicitly monitor people's behavior. That being said, the literature does suggest several ways that such security awareness could be improved. Many organizations require formal security awareness training for all workers when they join the organization and periodically thereafter, usually annually. Another main force that is found to have a strong correlation with employees' security awareness is managerial security participation. It also bridges security awareness with other organizational aspects. == Relationship between Security Awareness and Human Factors == Employees' behavior, cognitive biases, and decision-making processes influence the effectiveness of security measures. Research indicates that psychological factors, such as optimism bias, overconfidence, and habitual behaviors, can undermine security awareness initiatives. To address these challenges, organizations are increasingly using behavioral analytics and security nudges—subtle prompts like password reminders and phishing warnings—to encourage secure behavior. Human error remains the leading cause of cybersecurity incidents. A 2023 IBM Security report found that 95% of breaches are due to human mistakes, including falling for phishing emails, using weak passwords, and mishandling sensitive data. Organizations emphasize security awareness training as a key strategy to mitigate this risk. It is particularly important for leadership to foster a culture of cybersecurity and to provide targeted training to increase security awareness among all employees across the organization. == Coverage == Topics covered in security awareness training include: The nature of sensitive material and physical assets they may come in contact with, such as trade secrets, privacy concerns and government classified information Employee and contractor responsibilities in handling sensitive information, including review of employee nondisclosure agreements Requirements for proper handling of sensitive material in physical form, including marking, transmission, storage and destruction Proper methods for protecting sensitive information on computer systems, including password policy and use of two-factor authentication Other computer security concerns, including malware, phishing, social engineering, etc. Workplace security, including building access, wearing of security badges, reporting of Incidents, forbidden articles, etc. Consequences of failure to properly protect information, including potential loss of employment, economic consequences to the firm, damage to individuals whose private records are divulged, and possible civil and criminal penalties Security awareness means understanding that there is the potential for some people to deliberately or accidentally steal, damage, or misuse the data that is stored within a company's computer systems and throughout its organization. Therefore, it would be prudent to support the assets of the institution (information, physical, and personal) by trying to stop that from happening. According to the European Network and Information Security Agency, "Awareness of the risks and available safeguards is the first line of defence for the security of information systems and networks." "The focus of Security Awareness consultancy should be to achieve a long term shift in the attitude of employees towards security, whilst promoting a cultural and behavioural change within an organisation. Security policies should be viewed as key enablers for the organisation, not as a series of rules restricting the efficient working of your business." == Role of Gamification and Interactive Training == Modern security awareness programs increasingly utilize gamification, phishing simulations, and interactive learning modules. Studies have shown that engaging employees through serious games, reward systems, and real-world attack simulations improves retention and application of security practices. One example is phishing simulation training, where employees receive simulated phishing emails to test their ability to recognize threats. Research indicates that repeated exposure to such exercises leads to long-term improvements in security awareness. == Legislation and Compliance Requirements == Many industries mandate security awareness training to comply with regulations such as: General Data Protection Regulation (GDPR) – requires organizations to ensure data protection awareness among employees. Health Insurance Portability and Accountability Act (HIPAA) – mandates security awareness programs for healthcare providers. Payment Card Industry Data Security Standard (PCI-DSS) – enforces security training for businesses handling payment card information. == Measuring security awareness == In a 2016 study, researchers developed a method of measuring security awareness. Specifically they measured "understanding about circumventing security protocols, disrupting the intended functions of systems or collecting valuable information, and not getting caught" (p. 38). The researchers created a method that could distinguish between experts and novices by having people organize different security scenarios into groups. Experts will organize these scenarios based on centralized security themes where novices will organize the scenarios based on superficial themes. Security awareness is also assessed through real-time security metrics, such as tracking phishing click rates, password reuse tendencies, and policy adherence rates. Organizations are adopting continuous monitoring strategies to provide immediate feedback to employees about risky behavior and suggest corrective actions. == Evolving cyber threats and security awareness strategies == As cyber threats continue to evolve, security awareness programs must adapt to new attack vectors, such as AI-driven cyberattacks, deepfakes, and insider threats. ENISA's Threat Landscape report highlights the increasing prominence of these emerging threats, stressing the need for security measures that address both traditional attacks like ransomware and malware, as well as more sophisticated techniques such as Living Off Trusted Sites (LOTS) and advanced evasion methods used by cybercriminals.

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  • Refik Anadol

    Refik Anadol

    Refik Anadol (born November 7, 1985) is a Turkish American media artist and the co-founder of Refik Anadol Studio and Dataland. Recognized as a pioneer in the aesthetics of data visualization and AI arts, his work merges art, technology, science, and architecture. Through media embedded into existing architecture, live audio-visual performances, immersive rooms, exhibitions, AI data paintings and sculptures, and digital collections, Anadol explores collective memories, humanity's relationship to nature, the perception of space and time, and human-machine collaborations. His work has been exhibited in more than seventy cities on six continents. == Early life and education == Anadol was born and raised in Istanbul and grew up in a family of teachers. He taught himself basic programming on a Commodore 64 when he was eight. His connection to machines began with coding and video games. Anadol saw Blade Runner for the first time when he was eight; his mother said the way he perceived his surroundings shifted the day after he saw the film. He was fascinated with its futuristic depiction of downtown Los Angeles, and transfixed by as a scene during which a replicant discovers that her memories are an implanted component of her machine mind, In a 2024 interview with the Financial Times, he said: "Since that moment, one of my inspirations has been that question: 'What can a machine do with someone else's memories?" Anadol attended Istanbul Bilgi University, where he received a BA in photography and video in 2009 and an MFA in visual communication in 2011. In 2014 he earned an MFA in design media arts at UCLA. He was mentored by Casey Reas, Jennifer Steinkamp, and Christian Moeller. == Career and selected works == === 2008–2012: Data painting, Quadrature and Quadrangle, Istanbul Biennial === As an undergraduate, Anadol read a paper by Lev Manovich on augmented space. Manovich's assertion that collaborations between architects and artists could make the "invisible flow of data visible" triggered Anadol's imagination, and in 2008, he altered built space for the first time. Bringing a projector outside, he projected large-scale images onto a concrete to create the illusion of movement. Coining the term "data painting," the piece inspired Anadol to use light as material and data as pigment. In 2010 he created Quadrature with Alican Aktürk, a fellow graduate student, at the SantralIstanbul Art and Culture Center's main gallery building. A live audio-visual performance that examined the relationship between architecture and media, Quadrature used video projection techniques to manipulate footage of quadrilaterals. He followed Quadrature with Quadrangle at SANAA School of Design in Essen, Germany, using the entire 360 degrees of the building as a canvas. In 2011, he was invited to create a media installation at the Istanbul Biennial on the heavily trafficked İstiklal Avenue. He created a site-specific large-scale interpretation of sounds he recorded during different times of day, and used nine projectors to project reinterpreted images. The work was titled Augmented Structures v1.0. Anadol's first solo exhibition, Sceptical Interventions, was held at the Piveneli Gallery in Istanbul in early 2012. Later that year he moved to Los Angeles to attend UCLA's Design Media Arts program. The first place he went after his arrival was downtown Los Angeles. [6] === 2013–2016: Visions of America: Amériques, Infinity Room, Google AMI === In 2013, at Microsoft Research's annual Design Expo, Anadol presented his idea to use the external walls of Walt Disney Concert Hall as a canvas. His presentation brought him to the attention of Gehry Technologies, and with the support of Gehry and his team, Anadol was offered the use of the original 3D model of the concert hall. For his 2014 thesis project, with assistance from architects and UCLA researchers, he created a site-specific architectural video installation inside the concert hall that accompanied a Los Angeles Philharmonic performance of Edgard Varèse's Amérique. Titled Visions of America: Amériques, Anadol used algorithmic sound analysis to listen and respond to the music in real-time. He tracked conductor Esa-Pekka Salonen's heartbeat with a sensor and used a 3-D camera system to integrate Salonen's movements. He created Infinity Room at the Zorlu PSM for the 2015 Istanbul Biennial. Rather than creating an illusion only with mirrors, Anadol used pixel and 3D projection mapping to transform every surface of the room into an abstract infinite moving space. A temporary immersive environment, Infinity Room was also exhibited at events including South by Southwest in Austin, Texas, the New Zealand Festival in Wellington, New Zealand, and Jeffrey Deitch in Los Angeles. In 2016, Anadol was awarded the first Google Artists and Machine Intelligence Artist Residency; it was just after a team at Google opened up the algorithm for DeepDream, a computer vision program that prompted Anadol's realization that if a machine could learn, it could remember, dream, and hallucinate. === 2017–2018: Winds of Boston, Archive Dreaming, Melting Memories, WDCH Dreams === In 2017, he created the data painting Winds of Boston, a 6' x 13' foot video installation in the lobby of a Boston office building, using software he created to read, analyze and visualize wind speed, direction, and gust patterns along with time and temperature at 20-second intervals recorded over a one-year period at Logan International Airport. Later in the year, he used AI to generate infinite new outputs based on a massive dataset for Archive Dreaming, an immersive installation at Salt Research, a contemporary gallery and library in Istanbul. Inspired by his idea of consciousness and its context within AI, as well as Jorge Luis Borges' The Library of Babel, Anadol used AI and machine learning to look at and discover interactions and correlations between 1.7 million items culled from 40,000 publications covering Turkish contemporary and modern art, architecture, and economics from 1997 to 2010. Archive Dreaming, which could be controlled by users with a joystick, dreamed of unexpected correlations among documents when idle. In 2018, after his uncle was diagnosed with Alzheimer's, Anadol created Melting Memories. Working with scientists from the neuroscape laboratory at the University of California, San Francisco, he used academic data from the neuroscience archives and EEG scans of an anonymous Alzheimer's disease dataset to create AI-generated visuals related to memory, health, degeneration, and decay.Melting Memories was projected on the walls of Pilevneli Gallery; visitors to the exhibition could watch as millions of pixels reconstructed people's memories. Anadol won the Lumen Prize Gold Award for Melting Memories. Anadol was commissioned by the Los Angeles Philharmonic to create an installation to celebrate the orchestra's centennial anniversary in 2018. He worked with Google's Kenric MacDowell to create WDCH Dreams, using algorithmic visualizations of data to mimic the process of human dreaming. Projected across the exterior walls of Walt Disney Concert Hall using 42 large-scale projectors with 50K visual resolution, 8-channel sound, and 1.2M luminance, Anadol painted with data points culled from the orchestra's archives, including 587,763 images, 1,880 videos, 1,483 metadata files, and 17,773 audio files. Because Gehry gave him access to the 3D architectural files of Walt Disney Concert Hall, Anadol knew the exact contours of the building. WDCH Dreams debuted in September 2018. A 12-minute performance in three parts staged every 30 minutes over ten nights, "Centennial Memories,” the first piece, used 44.5 terabytes of historical data from the Phil's archives. It was followed by "Consciousness", which processed every note the orchestra has ever recorded, using billions of data points to generate connections; and "Dream," which merged "Centennial Memories" and "Consciousness" to create hallucinations that were described in the New York Times as "a sort of combinatorial Fantasia. === 2019–2021: Machine Hallucinations: NYC, Machine Hallucinations: Nature Dreams, Machine Memories: Space, Quantum Memories === In 2019, Refik Anadol presented Latent History at Fotografiska Stockholm. The site specific installation transformed photographic archives of Stockholm into a large scale, machine generated visual projection displayed in the museum’s main exhibition hall. Drawing on thousands of archival images spanning approximately 150 years, the work used artificial intelligence to reinterpret the city’s historical imagery as a continuously evolving visual narrative.. Anadol began thinking about the work that would become the Machine Hallucinations series while in residence at Google. In 2019, he completed the first work in the series, Machine Hallucinations: NYC, which used 300 million photos of New York City and 113 million additional data points, including subway sounds, ra

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  • IJCAI Computers and Thought Award

    IJCAI Computers and Thought Award

    The IJCAI Computers and Thought Award is presented every two years by the International Joint Conference on Artificial Intelligence (IJCAI), recognizing outstanding young scientists in artificial intelligence. It was originally funded with royalties received from the book Computers and Thought (edited by Edward Feigenbaum and Julian Feldman), and is currently funded by IJCAI. It is considered to be "the premier award for artificial intelligence researchers under the age of 35". == Laureates == Terry Winograd (1971) Patrick Winston (1973) Chuck Rieger (1975) Douglas Lenat (1977) David Marr (1979) Gerald Sussman (1981) Tom Mitchell (1983) Hector Levesque (1985) Johan de Kleer (1987) Henry Kautz (1989) Rodney Brooks (1991) Martha E. Pollack (1991) Hiroaki Kitano (1993) Sarit Kraus (1995) Stuart Russell (1995) Leslie Kaelbling (1997) Nicholas Jennings (1999) Daphne Koller (2001) Tuomas Sandholm (2003) Peter Stone (2007) Carlos Guestrin (2009) Andrew Ng (2009) Vincent Conitzer (2011) Malte Helmert (2011) Kristen Grauman (2013) Ariel D. Procaccia (2015) Percy Liang (2016) for his contributions to both the approach of semantic parsing for natural language understanding and better methods for learning latent-variable models, sometimes with weak supervision, in machine learning. Devi Parikh (2017) Stefano Ermon (2018) Guy Van den Broeck (2019) for his contributions to statistical and relational artificial intelligence, and the study of tractability in learning and reasoning. Piotr Skowron (2020) for his contributions to computational social choice, and to the theory of committee elections. Fei Fang (2021) for her contributions to integrating machine learning with game theory and the use of these novel techniques to tackle societal challenges such as more effective deployment of security resources, enhancing environmental sustainability, and reducing food insecurity. Bo Li (2022) for her contributions to uncovering the underlying connections among robustness, privacy, and generalization in AI, showing how different models are vulnerable to malicious attacks, and how to eliminate these vulnerabilities using mathematical tools that provide robustness guarantees for learning models and privacy protection. Pin-Yu Chen (2023) for his contributions to consolidating properties of trust, robustness and safety into rigorous algorithmic procedures and computable metrics for improving AI systems. Nisarg Shah (2024) for his contributions to AI and society, in particular foundational work on the theory of algorithmic fairness using principles from social choice theory. Aditya Grover (2025) for his foundational contributions uniting deep generative models, representation learning, and reinforcement learning, and for their applications in advancing scientific reasoning.

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  • SQLf

    SQLf

    SQLf is a SQL extended with fuzzy set theory application for expressing flexible (fuzzy) queries to traditional (or ″Regular″) Relational Databases. Among the known extensions proposed to SQL, at the present time, this is the most complete, because it allows the use of diverse fuzzy elements in all the constructions of the language SQL. SQLf is the only known proposal of flexible query system allowing linguistic quantification over set of rows in queries, achieved through the extension of SQL nesting and partitioning structures with fuzzy quantifiers. It also allows the use of quantifiers to qualify the quantity of search criteria satisfied by single rows. Several mechanisms are proposed for query evaluation, the most important being the one based on the derivation principle. This consists in deriving classic queries that produce, given a threshold t, a t-cut of the result of the fuzzy query, so that the additional processing cost of using a fuzzy language is diminished. == Basic block == The fundamental querying structure of SQLf is the multi-relational block. The conception of this structure is based on the three basic operations of the relational algebra: projection, cartesian product and selection, and the application of fuzzy sets’ concepts. The result of a SQLf query is a fuzzy set of rows that is a fuzzy relation instead of a regular relation. A basic block in SQLf consists of a SELECT clause, a FROM clause and an optional WHERE clause. The semantic of this query structure is: The SELECT clause corresponds to the projection. It specifies the relations’ attributes (or attribute expressions) that will be selected. The resulting table is a fuzzy set and it is given in decreasing ordered of satisfaction degree. The SELECT clause specifies also a calibration that is intended to restrict the set of rows retrieved. There are two kinds of calibrations: quantitative and qualitative. In quantitative calibration the user specifies the number of results to be retrieved, so that the query will retrieve the rows with highest membership degrees up to the number of required answers. In qualitative calibration the user specifies a minim level of satisfaction that must have any retrieved row. The FROM clause corresponds to the Cartesian Product. The consult is made on the Cartesian Product of the relations that are specified in this clause. The WHERE clause corresponds to the selection. It specifies the condition for which the satisfaction degree will be calculated. Rows that do not satisfy at all the condition are rejected. This condition is a fuzzy predicate that may involve any attribute of the relations. The following is an example of a SELECT query that returns a list of hotels that are cheap. The query retrieves all rows from the Hotels table that satisfice the fuzzy predicate cheap defined by the fuzzy set μ=(∞, ∞, 25, 30). The result is sorted in descending order by the membership degree of the query.

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  • Biopython

    Biopython

    Biopython is an open-source collection of non-commercial Python modules for computational biology and bioinformatics. It makes robust and well-tested code easily accessible to researchers. Python is an object-oriented programming language and is a suitable choice for automation of common tasks. The availability of reusable libraries saves development time and lets researchers focus on addressing scientific questions. Biopython is constantly updated and maintained by a large team of volunteers across the globe. Biopython contains parsers for diverse bioinformatic sequence, alignment, and structure formats. Sequence formats include FASTA, FASTQ, GenBank, and EMBL. Alignment formats include Clustal, BLAST, PHYLIP, and NEXUS. Structural formats include the PDB, which contains the 3D atomic coordinates of the macromolecules. It has provisions to access information from biological databases like NCBI, Expasy, PBD, and BioSQL. This can be used in scripts or incorporated into their software. Biopython contains a standard sequence class, sequence alignment, and motif analysis tools. It also has clustering algorithms, a module for structural biology, and a module for phylogenetics analysis. == History == The development of Biopython began in 1999, and it was first released in July 2000. First "semi-complete" and "semi-stable" release was done in March 2001 and December 2002 respectively. It was developed during a similar time frame and with analogous goals to other projects that added bioinformatics capabilities to their respective programming languages, including BioPerl, BioRuby and BioJava. Early developers on the project included Jeff Chang, Andrew Dalke and Brad Chapman, though over 100 people have made contributions to date. In 2007, a similar Python project, namely PyCogent, was established. The initial scope of Biopython involved accessing, indexing and processing biological sequence files. The retrieved data from common biological databases will then be parsed into a python data structure. While this is still a major focus, over the following years added modules have extended its functionality to cover additional areas of biology. The key challenge in the design of parsers for bioinformatics file formats is the frequency at which the data formats change. This is due to inadequate curation of the structure of the data, and changes in the database contents. This problem is overcome by the application of a standard event-oriented parser design (see Key features and examples). As of version 1.77, Biopython no longer supports Python 2. The current stable release of Biopython version 1.85 was released on 15 January 2025. It only supports Python 3 and the recent releases of Biopython require NumPy (and not Numeric). == Design == Wherever possible, Biopython follows the conventions used by the Python programming language to make it easier for users familiar with Python. For example, Seq and SeqRecord objects can be manipulated via slicing, in a manner similar to Python's strings and lists. It is also designed to be functionally similar to other Bio projects, such as BioPerl. It is organized into modular sub-packages, e.g., Bio.Seq, Bio.Align, Bio.PDB, Bio.Entrez each of them useful in a different bioinformatics domain. It used principles, like encapsulation and polymorphism, notably in classes Seq, SeqRecord, and Bio.PDB.Structure. It can also interoperate with other Python tools (Pandas, Matplotlib and SciPy). Biopython can read and write most common file formats for each of its functional areas, and its license is permissive and compatible with most other software licenses, which allows Biopython to be used in a variety of software projects. == Requirements == Biopython is currently supported and tested with the following Python implementations: Python 3 or PyPy3 NumPy == Key features and examples == === Input and output === Biopython can read and write to a number of common formats. When reading files, descriptive information in the file is used to populate the members of Biopython classes, such as SeqRecord. This allows records of one file format to be converted into others. Very large sequence files can exceed a computer's memory resources, so Biopython provides various options for accessing records in large files. They can be loaded entirely into memory in Python data structures, such as lists or dictionaries, providing fast access at the cost of memory usage. Alternatively, the files can be read from disk as needed, with slower performance but lower memory requirements. === Sequences === A core concept in Biopython is the biological sequence, and this is represented by the Seq class. A Biopython Seq object is similar to a Python string in many respects: it supports the Python slice notation, can be concatenated with other sequences and is immutable. This object includes both general string-like and biological sequence-specific methods. It is best to store information about the biological type (DNA, RNA, protein) separately from the sequence, rather than using an explicit alphabet argument. === Sequence annotation === The SeqRecord class describes sequences, along with information such as name, description and features in the form of SeqFeature objects. Each SeqFeature object specifies the type of the feature and its location. Feature types can be ‘gene’, ‘CDS’ (coding sequence), ‘repeat_region’, ‘mobile_element’ or others, and the position of features in the sequence can be exact or approximate. === Accessing online databases === Through the Bio.Entrez module, users of Biopython can download biological data from NCBI databases. Each of the functions provided by the Entrez search engine is available through functions in this module, including searching for and downloading records. === Phylogeny === The Bio.Phylo module provides tools for working with and visualising phylogenetic trees. A variety of file formats are supported for reading and writing, including Newick, NEXUS and phyloXML. Common tree manipulations and traversals are supported via the Tree and Clade objects. Examples include converting and collating tree files, extracting subsets from a tree, changing a tree's root, and analysing branch features such as length or score. Rooted trees can be drawn in ASCII or using matplotlib (see Figure 1), and the Graphviz library can be used to create unrooted layouts (see Figure 2). === Genome diagrams === The GenomeDiagram module provides methods of visualising sequences within Biopython. Sequences can be drawn in a linear or circular form (see Figure 3), and many output formats are supported, including PDF and PNG. Diagrams are created by making tracks and then adding sequence features to those tracks. By looping over a sequence's features and using their attributes to decide if and how they are added to the diagram's tracks, one can exercise much control over the appearance of the final diagram. Cross-links can be drawn between different tracks, allowing one to compare multiple sequences in a single diagram. === Macromolecular structure === The Bio.PDB module can load molecular structures from PDB and mmCIF files, and was added to Biopython in 2003. The Structure object is central to this module, and it organises macromolecular structure in a hierarchical fashion: Structure objects contain Model objects which contain Chain objects which contain Residue objects which contain Atom objects. Disordered residues and atoms get their own classes, DisorderedResidue and DisorderedAtom, that describe their uncertain positions. Using Bio.PDB, one can navigate through individual components of a macromolecular structure file, such as examining each atom in a protein. Common analyses can be carried out, such as measuring distances or angles, comparing residues and calculating residue depth. === Population genetics === The Bio.PopGen module adds support to Biopython for Genepop, a software package for statistical analysis of population genetics. This allows for analyses of Hardy–Weinberg equilibrium, linkage disequilibrium and other features of a population's allele frequencies. This module can also carry out population genetic simulations using coalescent theory with the fastsimcoal2 program. === Wrappers for command line tools === Biopython previously included command-line wrappers for tools such as BLAST, Clustal, EMBOSS, and SAMtools. This option allowed users to run external tool commands from within the code using specialized Biopython classes. However, Bio.Application modules and their wrappers have deprecated and will be removed in future Biopython releases. The main reason for this is the high maintenance burden of updating them with the evolving external tools. The recommended approach is to directly construct and execute command-line tool commands using Python’s built-in subprocess module. This method provides flexibility and removes the dependency on the Biopython wrappers. subprocess is a native Python module useful for running ext

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  • Ordered weighted averaging

    Ordered weighted averaging

    In applied mathematics, specifically in fuzzy logic, the ordered weighted averaging (OWA) operators provide a parameterized class of mean type aggregation operators. They were introduced by Ronald R. Yager. Many notable mean operators such as the max, arithmetic average, median and min, are members of this class. They have been widely used in computational intelligence because of their ability to model linguistically expressed aggregation instructions. == Definition == An OWA operator of dimension n {\displaystyle \ n} is a mapping F : R n → R {\displaystyle F:\mathbb {R} ^{n}\rightarrow \mathbb {R} } that has an associated collection of weights W = [ w 1 , … , w n ] {\displaystyle \ W=[w_{1},\ldots ,w_{n}]} lying in the unit interval and summing to one and with F ( a 1 , … , a n ) = ∑ j = 1 n w j b j {\displaystyle F(a_{1},\ldots ,a_{n})=\sum _{j=1}^{n}w_{j}b_{j}} where b j {\displaystyle b_{j}} is the jth largest of the a i {\displaystyle a_{i}} . By choosing different W one can implement different aggregation operators. The OWA operator is a non-linear operator as a result of the process of determining the bj. == Notable OWA operators == F ( a 1 , … , a n ) = max ( a 1 , … , a n ) {\displaystyle \ F(a_{1},\ldots ,a_{n})=\max(a_{1},\ldots ,a_{n})} if w 1 = 1 {\displaystyle \ w_{1}=1} and w j = 0 {\displaystyle \ w_{j}=0} for j ≠ 1 {\displaystyle j\neq 1} F ( a 1 , … , a n ) = min ( a 1 , … , a n ) {\displaystyle \ F(a_{1},\ldots ,a_{n})=\min(a_{1},\ldots ,a_{n})} if w n = 1 {\displaystyle \ w_{n}=1} and w j = 0 {\displaystyle \ w_{j}=0} for j ≠ n {\displaystyle j\neq n} F ( a 1 , … , a n ) = a v e r a g e ( a 1 , … , a n ) {\displaystyle \ F(a_{1},\ldots ,a_{n})=\mathrm {average} (a_{1},\ldots ,a_{n})} if w j = 1 n {\displaystyle \ w_{j}={\frac {1}{n}}} for all j ∈ [ 1 , n ] {\displaystyle j\in [1,n]} == Properties == The OWA operator is a mean operator. It is bounded, monotonic, symmetric, and idempotent, as defined below. == Characterizing features == Two features have been used to characterize the OWA operators. The first is the attitudinal character, also called orness. This is defined as A − C ( W ) = 1 n − 1 ∑ j = 1 n ( n − j ) w j . {\displaystyle A-C(W)={\frac {1}{n-1}}\sum _{j=1}^{n}(n-j)w_{j}.} It is known that A − C ( W ) ∈ [ 0 , 1 ] {\displaystyle A-C(W)\in [0,1]} . In addition A − C(max) = 1, A − C(ave) = A − C(med) = 0.5 and A − C(min) = 0. Thus the A − C goes from 1 to 0 as we go from Max to Min aggregation. The attitudinal character characterizes the similarity of aggregation to OR operation(OR is defined as the Max). The second feature is the dispersion. This defined as H ( W ) = − ∑ j = 1 n w j ln ⁡ ( w j ) . {\displaystyle H(W)=-\sum _{j=1}^{n}w_{j}\ln(w_{j}).} An alternative definition is E ( W ) = ∑ j = 1 n w j 2 . {\displaystyle E(W)=\sum _{j=1}^{n}w_{j}^{2}.} The dispersion characterizes how uniformly the arguments are being used. == Type-1 OWA aggregation operators == The above Yager's OWA operators are used to aggregate the crisp values. Can we aggregate fuzzy sets in the OWA mechanism? The Type-1 OWA operators have been proposed for this purpose. So the type-1 OWA operators provides us with a new technique for directly aggregating uncertain information with uncertain weights via OWA mechanism in soft decision making and data mining, where these uncertain objects are modelled by fuzzy sets. The type-1 OWA operator is defined according to the alpha-cuts of fuzzy sets as follows: Given the n linguistic weights { W i } i = 1 n {\displaystyle \left\{{W^{i}}\right\}_{i=1}^{n}} in the form of fuzzy sets defined on the domain of discourse U = [ 0 , 1 ] {\displaystyle U=[0,\;\;1]} , then for each α ∈ [ 0 , 1 ] {\displaystyle \alpha \in [0,\;1]} , an α {\displaystyle \alpha } -level type-1 OWA operator with α {\displaystyle \alpha } -level sets { W α i } i = 1 n {\displaystyle \left\{{W_{\alpha }^{i}}\right\}_{i=1}^{n}} to aggregate the α {\displaystyle \alpha } -cuts of fuzzy sets { A i } i = 1 n {\displaystyle \left\{{A^{i}}\right\}_{i=1}^{n}} is given as Φ α ( A α 1 , … , A α n ) = { ∑ i = 1 n w i a σ ( i ) ∑ i = 1 n w i | w i ∈ W α i , a i ∈ A α i , i = 1 , … , n } {\displaystyle \Phi _{\alpha }\left({A_{\alpha }^{1},\ldots ,A_{\alpha }^{n}}\right)=\left\{{{\frac {\sum \limits _{i=1}^{n}{w_{i}a_{\sigma (i)}}}{\sum \limits _{i=1}^{n}{w_{i}}}}\left|{w_{i}\in W_{\alpha }^{i},\;a_{i}}\right.\in A_{\alpha }^{i},\;i=1,\ldots ,n}\right\}} where W α i = { w | μ W i ( w ) ≥ α } , A α i = { x | μ A i ( x ) ≥ α } {\displaystyle W_{\alpha }^{i}=\{w|\mu _{W_{i}}(w)\geq \alpha \},A_{\alpha }^{i}=\{x|\mu _{A_{i}}(x)\geq \alpha \}} , and σ : { 1 , … , n } → { 1 , … , n } {\displaystyle \sigma :\{\;1,\ldots ,n\;\}\to \{\;1,\ldots ,n\;\}} is a permutation function such that a σ ( i ) ≥ a σ ( i + 1 ) , ∀ i = 1 , … , n − 1 {\displaystyle a_{\sigma (i)}\geq a_{\sigma (i+1)},\;\forall \;i=1,\ldots ,n-1} , i.e., a σ ( i ) {\displaystyle a_{\sigma (i)}} is the i {\displaystyle i} th largest element in the set { a 1 , … , a n } {\displaystyle \left\{{a_{1},\ldots ,a_{n}}\right\}} . The computation of the type-1 OWA output is implemented by computing the left end-points and right end-points of the intervals Φ α ( A α 1 , … , A α n ) {\displaystyle \Phi _{\alpha }\left({A_{\alpha }^{1},\ldots ,A_{\alpha }^{n}}\right)} : Φ α ( A α 1 , … , A α n ) − {\displaystyle \Phi _{\alpha }\left({A_{\alpha }^{1},\ldots ,A_{\alpha }^{n}}\right)_{-}} and Φ α ( A α 1 , … , A α n ) + , {\displaystyle \Phi _{\alpha }\left({A_{\alpha }^{1},\ldots ,A_{\alpha }^{n}}\right)_{+},} where A α i = [ A α − i , A α + i ] , W α i = [ W α − i , W α + i ] {\displaystyle A_{\alpha }^{i}=[A_{\alpha -}^{i},A_{\alpha +}^{i}],W_{\alpha }^{i}=[W_{\alpha -}^{i},W_{\alpha +}^{i}]} . Then membership function of resulting aggregation fuzzy set is: μ G ( x ) = ∨ α : x ∈ Φ α ( A α 1 , ⋯ , A α n ) α ⁡ α {\displaystyle \mu _{G}(x)=\mathop {\vee } _{\alpha :x\in \Phi _{\alpha }\left({A_{\alpha }^{1},\cdots ,A_{\alpha }^{n}}\right)_{\alpha }}\alpha } For the left end-points, we need to solve the following programming problem: Φ α ( A α 1 , ⋯ , A α n ) − = min W α − i ≤ w i ≤ W α + i A α − i ≤ a i ≤ A α + i ∑ i = 1 n w i a σ ( i ) / ∑ i = 1 n w i {\displaystyle \Phi _{\alpha }\left({A_{\alpha }^{1},\cdots ,A_{\alpha }^{n}}\right)_{-}=\min \limits _{\begin{array}{l}W_{\alpha -}^{i}\leq w_{i}\leq W_{\alpha +}^{i}A_{\alpha -}^{i}\leq a_{i}\leq A_{\alpha +}^{i}\end{array}}\sum \limits _{i=1}^{n}{w_{i}a_{\sigma (i)}/\sum \limits _{i=1}^{n}{w_{i}}}} while for the right end-points, we need to solve the following programming problem: Φ α ( A α 1 , ⋯ , A α n ) + = max W α − i ≤ w i ≤ W α + i A α − i ≤ a i ≤ A α + i ∑ i = 1 n w i a σ ( i ) / ∑ i = 1 n w i {\displaystyle \Phi _{\alpha }\left({A_{\alpha }^{1},\cdots ,A_{\alpha }^{n}}\right)_{+}=\max \limits _{\begin{array}{l}W_{\alpha -}^{i}\leq w_{i}\leq W_{\alpha +}^{i}A_{\alpha -}^{i}\leq a_{i}\leq A_{\alpha +}^{i}\end{array}}\sum \limits _{i=1}^{n}{w_{i}a_{\sigma (i)}/\sum \limits _{i=1}^{n}{w_{i}}}} Zhou et al. presented a fast method to solve two programming problem so that the type-1 OWA aggregation operation can be performed efficiently. == OWA for committee voting == Amanatidis, Barrot, Lang, Markakis and Ries present voting rules for multi-issue voting, based on OWA and the Hamming distance. Barrot, Lang and Yokoo study the manipulability of these rules.

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  • Micah Xavier Johnson

    Micah Xavier Johnson

    Micah Xavier Johnson (July 2, 1991 – July 8, 2016) was an American Army reserve Afghan war veteran, black nationalist, and mass murderer who perpetrated the 2016 shooting of Dallas police officers during a Black Lives Matter protest. He ambushed and killed five officers and wounded eleven others in Downtown, Dallas, Texas. He was killed by police during a standoff after expressing anger over police killings of black men. The shootings were the second-deadliest targeted attack on law enforcement officers in U.S. history, surpassed only by the September 11 attacks. == Early life == Micah Xavier Johnson was born in Magee, Mississippi, on July 2, 1991, and he was raised in Mesquite, Texas. When he was four years old, his parents divorced. At 17, Johnson enrolled at John Horn High School, where he joined the Junior Reserve Officers' Training Corps, as reported by the Mesquite Independent school district. He faced academic challenges, graduating in 2009 with a 1.98 GPA and ranking 430th out of 453 students in his class. In Spring 2011, Johnson registered for four courses at Richland college but did not complete any. Evidence suggests his enrollment at Richland gave him access to El Centro College, due to his pre-planned and coordinated movements throughout Building B during his standoff with police in 2016. == Military service == === Enlistment and early service === Micah Xavier Johnson enlisted in the U.S. Army Reserve in March 2009 at the age of 18, shortly after graduating high school in Mesquite, Texas. His initial service was primarily stateside, where he trained as a carpentry and masonry specialist (military occupational specialty 51B). This role involved engineering tasks such as construction and repair in support of military operations. During his reserve tenure, Johnson served part-time while living at home, and he was described by family and friends as initially idealistic about the military, even aspiring to become a police officer. === Deployment to Afghanistan === In September 2013, Johnson was activated for full-time duty and deployed to Afghanistan as part of the 420th Engineer Brigade, a unit based in Seagoville, Texas. His tour began in November 2013 and lasted approximately eight months, ending in July 2014. During this period, he performed non-combat engineering duties, though the stresses of serving in a combat zone were noted by those close to him. Associates from his service later suggested he experienced significant psychological strain, including the loss of friends and general disillusionment with military life, which contrasted with his pre-deployment enthusiasm. His mother later reflected that "the military was not what Micah thought it would be." === Sexual harassment allegation and early return === About six months into his deployment, in May 2014, Johnson faced a serious accusation of sexual harassment from a higher-ranking female soldier. She filed for a military protective order against him, prompting an investigation. As a result, his chain of command recommended an "other than honorable" discharge—the second (more severe is a dishonorable discharge, which does not require a court martial) most severe administrative separation short of a court-martial—and he was sent back to the United States ahead of schedule. Despite this, Johnson was not court-martialed, and the case did not lead to criminal charges. A military lawyer who represented him described the handling as unusual, noting that "someone really screwed up" in allowing him to avoid harsher consequences. === Post-deployment and discharge === Upon returning stateside in August 2014, Johnson resumed reserve duties with his engineering brigade until April 2015. He was honorably discharged at the rank of private first class (E-3), a relatively low junior enlisted rank after six years of service, which military sources attributed partly to the unresolved harassment allegation impacting his promotions and evaluations. Friends and family observed a marked change in his demeanor post-deployment: he became more reclusive, resentful toward the government, and withdrawn, with some speculating that the Afghanistan experience and the scandal contributed to a "small breakdown." In July 2016, following the Dallas shooting, the U.S. Army launched an internal review of his service record, including the harassment claims, to assess whether all misconduct allegations had been fully investigated. == Shootings == On July 7, 2016, a peaceful Black Lives Matter protest marched through downtown Dallas, Texas, drawing about 800 demonstrators. The event responded to the recent police killings of Alton Sterling in Baton Rouge, Louisiana, on July 5, and Philando Castile in Falcon Heights, Minnesota, on July 6—both black men shot during encounters captured on video. Around 100 officers monitored the march, which passed near El Centro College without incident until gunfire erupted around 8:45 p.m. Johnson arrived in a dark SUV, armed with an SKS semi-automatic rifle, a handgun, extra ammunition, and ballistic vests. He parked near the protest's end, chatted briefly with two officers, then opened fire on police from an elevated position on Lamar Street (now Botham Jean Boulevard). He shot from behind barriers, through windows, and while moving, targeting white officers specifically. The ambush killed five officers and wounded seven more, plus two civilians. Gunfire scattered protesters in panic as Johnson used military-style tactics, like quick position changes, to prolong the assault. === Standoff and Johnson's end === Johnson fled into El Centro College's Building C, then Building B, navigating pre-planned routes with familiarity from prior enrollment at nearby Richland College. He barricaded in a parking garage, wounding more officers in close-range fights. During two-hour negotiations, he taunted police via phone—laughing, singing, asking kill counts, and claiming planted bombs (none found). He admitted solo action, rage at White officers, and no group ties. At 2:30 a.m. on July 8, SWAT ended the standoff by detonating a bomb via remote-controlled robot in the garage, killing Johnson. This marked the first U.S. police use of such a tactic. === Victims and investigation findings === The slain officers were: Brent Thompson (Transit Authority, 36), Patrick Zamarripa (Dallas PD, 33), Michael Krol (Dallas PD, 40), Lorne Ahrens (Dallas PD, 48), and Michael Smith (Dallas PD, 55). Wounded officers included Sheik Smith, John Mitchell, and others; civilians She Tamara El-Sobky and Hillary Castro. Searches of Johnson's home revealed bomb-making materials, rifles, vests, and notes on tactics, suggesting plans for a larger attack. He had practiced explosions and honed skills post-discharge, including marksmanship. === Aftermath and impact === Dallas mourned with vigils and memorials, while national protests against police violence continued amid grief. President Barack Obama, the first African American president of the United States, called Johnson a "demented individual" and formed a task force on race and policing. The incident fueled debates on gun control, race relations, and veteran mental health—Johnson had sought VA treatment for stress and anxiety but showed no prior violent signs to friends. El Centro College canceled all classes on July 8. Police barricaded the perimeter and began canvassing the crime scene. The explosion that killed Johnson also destroyed the school's servers, further delaying reopening. The school partially reopened on July 20, with staff returning that day and students on the following day. Buildings A, B, and C remained closed pending the FBI investigation. == Motive == An investigation into his online activities uncovered his interest in black nationalist groups. The Southern Poverty Law Center (SPLC), and news outlets reported that Johnson "liked" the Facebook pages of black nationalist organizations such as the New Black Panther Party (NBPP), Nation of Islam, and Black Riders Liberation Party, three groups which are listed by the SPLC as hate groups. On Facebook, Johnson posted an angry and "disjointed" post against White people on July 2, several days before the attack. NBPP head Quanell X said after the shooting that Johnson had been a member of the NBPP's Houston chapter for about six months, several years before. Quanell X added that Johnson had been "asked to leave" the group for violating the organization's "chain of command" and espousing dangerous rhetoric, such as asking the NBPP why they had not purchased more weapons and ammunition, and expressing his desire to harm black church preachers because he believed they were more interested in money than God. Following the shooting, a national NBPP leader distanced the group from Johnson, saying that he "was not a member of" the party. Further investigation into his digital footprint showed that Johnson visited the sites of Marxist Leninist groups associated with "Revolutionary Black Nationalism",

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