AI Coding Scaffold

AI Coding Scaffold — independent reviews, comparisons, pricing and step-by-step guides on Aizhi.

  • Clara.io

    Clara.io

    Clara.io is web-based freemium 3D computer graphics software developed by Exocortex, a Canadian software company. The free or "Basic" component of their freemium offering, however, places severe restrictions, such as on saving models and importing texture maps, which are undisclosed in the company's own descriptions of their plans.vf TMN == History == Clara.io was announced in July 2013, and first presented as part of the official SIGGRAPH 2013 program later that month. By November 2013, when the open beta period started, Clara.io had 14,000 registered users. Clara.io claimed to have 26,000 registered users in January 2014, which grew to 85,000 by December 2014. Clara.io was permanently shut down on December 31, 2022, but the site is currently still partially functional to logged-in users. == Features == Polygonal modeling Constructive solid geometry Key frame animation Skeletal animation Hierarchical scene graph Texture mapping Photorealistic rendering (streaming cloud rendering using V-Ray Cloud) Scene publishing via HTML iframe embedding FBX, Collada, OBJ, STL and Three.js import/export Collaborative real-time editing Revision control (versioning & history) Scripting, Plugins & REST APIs 3D model library Unlisted and Private scenes (paid subscriptions only). == Technology == Clara.io is developed using HTML5, JavaScript, WebGL and Three.js. Clara.io does not rely on any browser plugins and thus runs on any platform that has a modern standards compliant browser. == Screenshots ==

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  • Kubeflow

    Kubeflow

    Kubeflow is an open-source platform for machine learning and MLOps on Kubernetes introduced by Google. The different stages in a typical machine learning lifecycle are represented with different software components in Kubeflow, including model development (Kubeflow Notebooks), model training (Kubeflow Pipelines, Kubeflow Training Operator), model serving (KServe), and automated machine learning (Katib). Each component of Kubeflow can be deployed separately, and it is not a requirement to deploy every component. == History == The Kubeflow project was first announced at KubeCon + CloudNativeCon North America 2017 by Google engineers David Aronchick, Jeremy Lewi, and Vishnu Kannan to address a perceived lack of flexible options for building production-ready machine learning systems. The project has also stated it began as a way for Google to open-source how they ran TensorFlow internally. The first release of Kubeflow (Kubeflow 0.1) was announced at KubeCon + CloudNativeCon Europe 2018. Kubeflow 1.0 was released in March 2020 via a public blog post announcing that many Kubeflow components were graduating to a "stable status", indicating they were now ready for production usage. In October 2022, Google announced that the Kubeflow project had applied to join the Cloud Native Computing Foundation. In July 2023, the foundation voted to accept Kubeflow as an incubating stage project. == Components == === Kubeflow Notebooks for model development === Machine learning models are developed in the notebooks component called Kubeflow Notebooks. The component runs web-based development environments inside a Kubernetes cluster, with native support for Jupyter Notebook, Visual Studio Code, and RStudio. === Kubeflow Pipelines for model training === Once developed, models are trained in the Kubeflow Pipelines component. The component acts as a platform for building and deploying portable, scalable machine learning workflows based on Docker containers. Google Cloud Platform has adopted the Kubeflow Pipelines DSL within its Vertex AI Pipelines product. === Kubeflow Training Operator for model training === For certain machine learning models and libraries, the Kubeflow Training Operator component provides Kubernetes custom resources support. The component runs distributed or non-distributed TensorFlow, PyTorch, Apache MXNet, XGBoost, and MPI training jobs on Kubernetes. === KServe for model serving === The KServe component (previously named KFServing) provides Kubernetes custom resources for serving machine learning models on arbitrary frameworks including TensorFlow, XGBoost, scikit-learn, PyTorch, and ONNX. KServe was developed collaboratively by Google, IBM, Bloomberg, NVIDIA, and Seldon. Publicly disclosed adopters of KServe include Bloomberg, Gojek, the Wikimedia Foundation, and others. === Katib for automated machine learning === Lastly, Kubeflow includes a component for automated training and development of machine learning models, the Katib component. It is described as a Kubernetes-native project and features hyperparameter tuning, early stopping, and neural architecture search. == Release timeline ==

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  • Winner-take-all (computing)

    Winner-take-all (computing)

    Winner-take-all is a computational principle applied in computational models of neural networks by which neurons compete with each other for activation. In the classical form, only the neuron with the highest activation stays active while all other neurons shut down; however, other variations allow more than one neuron to be active, for example the soft winner take-all, by which a power function is applied to the neurons. == Neural networks == In the theory of artificial neural networks, winner-take-all networks are a case of competitive learning in recurrent neural networks. Output nodes in the network mutually inhibit each other, while simultaneously activating themselves through reflexive connections. After some time, only one node in the output layer will be active, namely the one corresponding to the strongest input. Thus the network uses nonlinear inhibition to pick out the largest of a set of inputs. Winner-take-all is a general computational primitive that can be implemented using different types of neural network models, including both continuous-time and spiking networks. Winner-take-all networks are commonly used in computational models of the brain, particularly for distributed decision-making or action selection in the cortex. Important examples include hierarchical models of vision, and models of selective attention and recognition. They are also common in artificial neural networks and neuromorphic analog VLSI circuits. It has been formally proven that the winner-take-all operation is computationally powerful compared to other nonlinear operations, such as thresholding. In many practical cases, there is not only one single neuron which becomes active but there are exactly k neurons which become active for a fixed number k. This principle is referred to as k-winners-take-all. === Example algorithm === Consider a single linear neuron, with inputs x 1 , … , x n {\displaystyle x_{1},\dots ,x_{n}} . Each input has weight w i {\displaystyle w_{i}} , and the output of the neuron is ∑ i w i x i {\displaystyle \sum _{i}w_{i}x_{i}} . In the Instar learning rule, on each input vector, the weight vectors are modified according to Δ w i = η ( x i − w i ) {\displaystyle \Delta w_{i}=\eta (x_{i}-w_{i})} where η {\displaystyle \eta } is the learning rate. This rule is unsupervised, since we need just the input vector, not a reference output. Now, consider multiple linear neurons y 1 , … , y m {\displaystyle y_{1},\dots ,y_{m}} . The output of each satisfies y i = ∑ j w i j x j {\displaystyle y_{i}=\sum _{j}w_{ij}x_{j}} . In the winner-take-all algorithm, the weights are modified as follows. Given an input vector x {\displaystyle x} , each output is computed. The neuron with the largest output is selected, and the weights going into that neuron are modified according to the Instar learning rule. All other weights remain unchanged. The k-winners-take-all rule is similar, except that the Instar learning rule is applied to the weights going into the k neurons with the largest outputs. == Circuit example == A simple, but popular CMOS winner-take-all circuit is shown on the right. This circuit was originally proposed by Lazzaro et al. (1989) using MOS transistors biased to operate in the weak-inversion or subthreshold regime. In the particular case shown there are only two inputs (IIN,1 and IIN,2), but the circuit can be easily extended to multiple inputs in a straightforward way. It operates on continuous-time input signals (currents) in parallel, using only two transistors per input. In addition, the bias current IBIAS is set by a single global transistor that is common to all the inputs. The largest of the input currents sets the common potential VC. As a result, the corresponding output carries almost all the bias current, while the other outputs have currents that are close to zero. Thus, the circuit selects the larger of the two input currents, i.e., if IIN,1 > IIN,2, we get IOUT,1 = IBIAS and IOUT,2 = 0. Similarly, if IIN,2 > IIN,1, we get IOUT,1 = 0 and IOUT,2 = IBIAS. A SPICE-based DC simulation of the CMOS winner-take-all circuit in the two-input case is shown on the right. As shown in the top subplot, the input IIN,1 was fixed at 6nA, while IIN,2 was linearly increased from 0 to 10nA. The bottom subplot shows the two output currents. As expected, the output corresponding to the larger of the two inputs carries the entire bias current (10nA in this case), forcing the other output current nearly to zero. == Other uses == In stereo matching algorithms, following the taxonomy proposed by Scharstein and Szelliski, winner-take-all is a local method for disparity computation. Adopting a winner-take-all strategy, the disparity associated with the minimum or maximum cost value is selected at each pixel. It is axiomatic that in the electronic commerce market, early dominant players such as AOL or Yahoo! get most of the rewards. By 1998, one study found the top 5% of all web sites garnered more than 74% of all traffic. The winner-take-all hypothesis in economics suggests that once a technology or a firm gets ahead, it will do better and better over time, whereas lagging technology and firms will fall further behind. See First-mover advantage.

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  • International Conference on Acoustics, Speech, and Signal Processing

    International Conference on Acoustics, Speech, and Signal Processing

    ICASSP, the International Conference on Acoustics, Speech, and Signal Processing, is an annual flagship conference organized by IEEE Signal Processing Society. Ei Compendex has indexed all papers included in its proceedings. The first ICASSP was held in 1976 in Philadelphia, Pennsylvania, based on the success of a conference in Massachusetts four years earlier that had focused specifically on speech signals. As ranked by Google Scholar's h-index metric in 2016, ICASSP has the highest h-index of any conference in the Signal Processing field. The Brazilian ministry of education gave the conference an 'A1' rating based on its h-index. == Conference list ==

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  • Xara Designer Pro+

    Xara Designer Pro+

    Xara Designer Pro+ is an image editing program incorporating photo editing and vector illustration tools created by British software company Xara. Xara Xtreme LX was an early open source version for Linux. The Windows version was previously sold under the names Xara Studio, Xara X and Xara Xtreme, and traces its origin in the late 1980s to a title called ArtWorks for the Acorn Archimedes line of computers using RISC OS. There is a pro version called Xara Designer Pro (formerly Xara Xtreme Pro). The current commercial version of Xara Photo & Graphic Designer runs only on Windows, although Xara documents can be edited in a web browser on any platform using the Xara Cloud service. Versions up to 4.x can be run on Linux using Wine. == History == ArtWorks, the predecessor of Xara Photo and Graphic Designer, was developed on Acorn Archimedes and Risc PC 32-bit RISC computers running RISC OS by Computer Concepts during the late 1980s. The first version, developed for Microsoft Windows was initially called Xara Studio. It was licensed to Corel Corporation before wide-scale public availability, and from 1995 to 2000 was released as CorelXARA. Corel ceded the licensing rights back to Xara in 2000. The first Xara X version released in 2000 by its original owner. The next version, Xara X¹, was released in 2004. Xara Xtreme was released in 2005. In November 2006, Xara Xtreme PRO (an enhanced version of Xara Xtreme) was released. Xara Xtreme 3.2 and Xtreme Pro 3.2 were released in May 2007. 3.2 Pro included Xara3D, and both versions had more robust typography. In April 2008, Xara Xtreme 4.0 was released. Xara Xtreme and Xara Xtreme Pro 5.1 were released in June 2009. Features included more text-area enhancements, content-aware scaling of bitmap images, improved file import and export, master-page (repeated) objects, an object gallery (replacing the layer gallery), website-creation tools, and multi-stage graduated transparency. In June 2010, Xara Photo & Graphic Designer 6 and Xara Designer Pro 6 were released. Xtreme was renamed Photo & Graphic Designer, and Xtreme Pro was renamed Designer Pro. In May 2011, Xara Photo & Graphic Designer 7 and Xara Designer Pro 7 were released. Features included "magic" photo erase, user interface improvements to docking galleries and snapping alignment, and (in Pro) new webpage and website-design features. In May 2012, Xara Photo & Graphic Designer 2013 and Xara Designer Pro X (v8) were released. Xara Photo & Graphic Designer 9 was released in May 2013. In July of that year, Xara Designer Pro X9 was released. Xara Photo & Graphic Designer 10 was released on 16 July 2014, and Xara Designer Pro X10 on 23 July. Xara Photo & Graphic Designer 11 was released on 29 June 2015, and Xara Designer Pro X11 was released the following month. In 2016, the delivery model was changed to an update service which can be renewed annually. Users are entitled to any updates released while the update service is active. The first update-service updates were in May 2016 for Xara Photo & Graphic Designer, and July 2016 for Xara Designer Pro X. == Features == Xara Photo & Graphic Designer is known for its usability and fast renderer. It provides a fully anti-aliased display, advanced gradient fill, and transparency tools. Among vector editors, Xara Photo & Graphic Designer is considered to be fairly easy to learn, with similarities to CorelDRAW and Inkscape in terms of interface. Alongside the vector illustration tools, Xara Photo & Graphic Designer also includes an integrated photo tool offering manual and automatic photo enhance, cropping, adjustment of brightness levels, red-eye fix, 'magic' erase, photo healing, color and background erase, panoramas and content aware resizing. Designer Pro includes a wider range of tools for other design tasks including the creation of web pages and websites, and text and page layout tools for DTP with the aim of providing a single solution for all graphic and web design tasks.

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  • Generalized blockmodeling

    Generalized blockmodeling

    In generalized blockmodeling, the blockmodeling is done by "the translation of an equivalence type into a set of permitted block types", which differs from the conventional blockmodeling, which is using the indirect approach. It's a special instance of the direct blockmodeling approach. Generalized blockmodeling was introduced in 1994 by Patrick Doreian, Vladimir Batagelj and Anuška Ferligoj. == Definition == Generalized blockmodeling approach is a direct one, "where the optimal partition(s) is (are) identified based on minimal values of a compatible criterion function defined by the difference between empirical blocks and corresponding ideal blocks". At the same time, the much broader set of block types is introduced (while in conventional blockmodeling only certain types are used). The conventional blockmodeling is inductive due to nonspecification of neither the clusters or the location of block types, while in generalized blockmodeling the blockmodel is specified with more detail than just the permition of certain block types (e.g., prespecification). Further, it's possible to define departures from the permitted (ideal) blocktype, using criterion function. Using local optimization procedure, firstly the initial clustering (with specified number of clusters is done, based on random creation. How the clusters are neighboring to each other, is based on two transformations: 1) a vertex is moved from one to another cluster or 2) a pair of vertices is interchanged between two different clusters. This process of transformation steps is repeated many times, until only the best fitting partitions (with the minimized value of the criterion function) are kept as blockmodels for the future exploration of the network. Different types of generalized blockmodeling are: generalized binary blockmodeling, generalized valued blockmodeling and generalized homogeneity blockmodeling. == Benefits == According to Patrick Doreian, the benefits of generalized blockmodeling, are as follows: usage of explicit criterion function, compatible with a given type of equivalence, results to in-built measure of fit, which is integral to the establishment of the blockmodels (in conventional blockmodeling, there is no compelling and coherent measures of fit); partitions, based on generalized blockmodeling, regularly outperform and never perform less well than the partitions, based on conventional approach; with generalized blockmodeling it's possible to specify new types of blockmodels; this potentially unlimited set of new block types also results in permittion of inclusion of substantively driven blockmodels; in generalized blockmodeling, the specification of the block types and the location of some of them in the blockmodel is possible; researcher can speficy which (pair of) vertices must be (not) clustered together; this approach also allows the imposition of penalties, resulting into identification of empirical null blocks without inconsistencies with a corresponding ideal null block. == Problems == According to Doreian, the problems of generalized blockmodeling, are as follows: unknown sensitivity to particular data features, examination of boundary problems, computationally burdensome, which results in a constraint regarding practical network size (generalized blockmodeling is thus primarily used to analyse smaller networks (below 100 units)), identifying structure from incomplete network information, most of generalized blockmodeling is based on binary networks, but there is also development in the field of valued networks, criterion function is minimized for a specified blockmodel, with results in issues of evaluating statistically, based on the structural data alone, problems regarding three dimensional network data, problems regarding the evolution of fundamental network structure. == Book == The book with the same title, Generalized blockmodeling, written by Patrick Doreian, Vladimir Batagelj and Anuška Ferligoj, was in 2007 awarded the Harrison White Outstanding Book Award by the Mathematical Sociology Section of American Sociological Association.

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  • BookCorpus

    BookCorpus

    BookCorpus (also sometimes referred to as the Toronto Book Corpus) is a dataset consisting of the text of around 7,000 self-published books scraped from the indie ebook distribution website Smashwords. It was the main corpus used to train the initial GPT model by OpenAI, and has been used as training data for other early large language models including Google's BERT. The dataset consists of around 985 million words, and the books that comprise it span a range of genres, including romance, science fiction, and fantasy. The corpus was introduced in a 2015 paper by researchers from the University of Toronto and MIT titled "Aligning Books and Movies: Towards Story-like Visual Explanations by Watching Movies and Reading Books". The authors described it as consisting of "free books written by yet unpublished authors," yet this is factually incorrect. These books were published by self-published ("indie") authors who priced them at free; the books were downloaded without the consent or permission of Smashwords or Smashwords authors and in violation of the Smashwords Terms of Service. The dataset was initially hosted on a University of Toronto webpage. An official version of the original dataset is no longer publicly available, though at least one substitute, BookCorpusOpen, has been created. Though not documented in the original 2015 paper, the site from which the corpus's books were scraped is now known to be Smashwords.

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  • Variable-order Bayesian network

    Variable-order Bayesian network

    Variable-order Bayesian network (VOBN) models provide an important extension of both the Bayesian network models and the variable-order Markov models. VOBN models are used in machine learning in general and have shown great potential in bioinformatics applications. These models extend the widely used position weight matrix (PWM) models, Markov models, and Bayesian network (BN) models. In contrast to the BN models, where each random variable depends on a fixed subset of random variables, in VOBN models these subsets may vary based on the specific realization of observed variables. The observed realizations are often called the context and, hence, VOBN models are also known as context-specific Bayesian networks. The flexibility in the definition of conditioning subsets of variables turns out to be a real advantage in classification and analysis applications, as the statistical dependencies between random variables in a sequence of variables (not necessarily adjacent) may be taken into account efficiently, and in a position-specific and context-specific manner.

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  • List of Java software and tools

    List of Java software and tools

    This is a list of software and programming tools for the Java programming language, which includes frameworks, libraries, IDEs, build tools, application servers, and related projects. == Java frameworks == == Libraries == Apache Ant – build automation tool Apache Batik – SVG processing Apache Cayenne – object-relational mapping Apache Xerces – collection of software libraries for parsing, validating, serializing and manipulating XML. Applet – applet API Ardor3D – 3D graphics engine Bonita BPM – workflow engine Cassowary – constraint solving Checkstyle – static code analysis GNU Classpath – standard library implementation Colt – scientific computing and technical computing Commons Daemon – manages applications as daemons DESMO-J – discrete event simulation Diagrams.net – diagramming Disruptor – high-performance messaging Dom4j – XML processing Dynamic Languages Toolkit – support for dynamic programming languages on the JVM Echo – GUI Flying Saucer – XHTML/CSS rendering Formatting Objects Processor – XSL-FO to PDF H2 Database Engine – relational database IAIK-JCE – cryptography Internet Foundation Classes – legacy GUI JavaBeans – reusable component architecture for enabling encapsulation, events, and properties for software components JavaCC – open-source parser generator and lexical analyzer Java Class Library – standard library of Java and other JVM languages Java Native Access – provides Java programs easy access to native shared libraries without using the Java Native Interface Javolution – real-time computing Jblas – linear algebra JDBCFacade – simplifies JDBC use JExcel – Excel API JFugue – music programming JMusic – music programming Joget Workflow – workflow engine JOOQ Object Oriented Querying – fluent API for SQL JPOS – financial messaging JUNG – open-source graph modeling and visualization LanguageWare – language processing LibGDX – game development Modular Audio Recognition Framework – collection of voice, sound, speech, text and natural language processing algorithms. ASM – bytecode manipulation Open Inventor – 3D graphics OpenPDF – PDF Parallel Colt – parallel computing Parboiled – parser PlayN – game development QOCA – constraint solving QtJambi – Qt bindings SLF4J – logging StableUpdate – update management SWT – GUI SuanShu – numerical computing SwingLabs – GUI extensions UBY – natural language processing Undecimber – calendar XDoclet – attribute-oriented programming XINS – XML network services XStream – object serialization == Machine learning and AI == Apache Mahout – scalable machine learning library focused on clustering, classification, and collaborative filtering Apache MXNet – deep learning framework with Java API support Apache OpenNLP – machine learning based toolkit for natural language processing of text Deeplearning4j – distributed deep learning library Deep Java Library – open-source deep learning framework developed by Amazon Web Services Encog – framework for neural networks, genetic algorithms, Hidden Markov model, and Bayesian networks. LIBSVM – Support Vector Machine implementation Mallet – machine learning toolkit for classification, clustering, and topic modeling. MLlib – distributed machine-learning framework on top of Apache Spark Core Neuroph – lightweight neural network framework Weka – collection of machine learning algorithms for data mining Yooreeka – machine learning == Data mining == Java Data Mining (JDM) – standard Java API for data mining Massive Online Analysis (MOA) – data stream mining with concept drift == Math and scientific libraries == Apache Commons Math – general-purpose mathematics library including statistics, linear algebra, and optimization. Colt – high-performance scientific computing, including linear algebra and random numbers. Efficient Java Matrix Library (EJML) – dense and sparse matrix computations and linear algebra Easy Java Simulations – Open Source Physics project designed to create discrete computer simulations Exp4j – evaluates mathematical expressions at runtime GroovyLab – numerical computational environment Hipparchus – fork of Apache Commons Math with updated algorithms for statistics, linear algebra, and optimization. JAMA – numerical linear algebra library Jblas: Linear Algebra for Java (Jblas) – linear algebra library using native BLAS/LAPACK bindings Java Astrodynamics Toolkit – numerical library of software components for use in spaceflight applications for Java or MATLAB Matrix Toolkit Java (MTJ) – linear algebra library with BLAS and LAPACK support OjAlgo – optimization, linear algebra, and financial calculations. OptimJ – extension for mathematical optimization and constraint programming Parallel Colt – A parallel extension of Colt SuanShu – numerical analysis, linear algebra, statistics, and optimization. == Integrated development environments == See also: Java IDEs on Wikibooks Android Studio – IDE for Google's Android operating system BlueJ – educational IDE for teaching Java DrJava – lightweight Java IDE for beginners Eclipse IDE – open-source IDE with extensive plugin ecosystem Greenfoot – educational IDE IntelliJ IDEA – commercial and community editions from JetBrains JDeveloper – freeware IDE supplied by Oracle Corporation jGRASP – software visualizations MyEclipse – Java EE IDE NetBeans IDE – Apache NetBeans Visual Studio Code – general-purpose editor with Java extensions === Online IDEs === Eclipse Che GitHub Codespaces JDoodle Replit == Text editors with Java support == == Build tools and package managers == Apache Ant – automating software build Apache Ivy – subproject of Apache Ant Apache Maven – build automation and dependency management Boot – build automation for Clojure CMake – build tool with limited support for java Gradle – modern build automation tool Go continuous delivery (GoCD) – continuous delivery and build automation server Jenkins – automation server continuous delivery JitPack – package repository for Git projects Leiningen – build automation for Clojure Simple build tool (sbt) – open-source build tool Spring Roo – rapid application development of Java-based enterprise software WaveMaker – low-code development platform == Java runtimes, compilers and virtual machines == Android Runtime – runtime environment javac – Java programming language compiler Java Virtual Machine (JVM) – virtual machine that executes Java bytecode JD Decompiler JEB decompiler – disassembler and decompiler software for Android applications GraalVM – Just-in-time compilation HotSpot – JVM implementation included in OpenJDK == JVM languages and dialects == Clojure – Lisp dialect Groovy JRuby – Ruby implementation Jython – Python implementation Kotlin – popular for Android app development Renjin – R implementation Scala == Application servers and containers == Apache Geronimo – open source application server Apache MINA – event-driven asynchronous network application framework Apache Tomcat – web container and web server Apache TomEE – Apache Tomcat with Java EE features Borland Enterprise Server – discontinued application server by Borland ColdFusion – commercial application server by Adobe Systems GlassFish – application server for Jakarta EE IBM WebSphere Application Server – enterprise application server by IBM IBM WebSphere Application Server Community Edition – open source edition of WebSphere (discontinued) JBoss Enterprise Application Platform – Red Hat's supported distribution of JBoss/WildFly JEUS – commercial Java EE application server from TmaxSoft Jetty – HTTP server and web container Lucee (formerly Railo) – open source CFML application server Netty – non-blocking I/O client–server framework for network applications Oracle Containers for J2EE – discontinued application server by Oracle Oracle WebLogic Server – enterprise application server by Oracle Orion Application Server – early commercial Java EE server by IronFlare Payara Server – fork of GlassFish for production use Resin – Java application server by Caucho (open source and professional editions) SAP NetWeaver Application Server – enterprise application server by SAP WildFly – application server == Debugging and profiling tools == jdb – Java debugger bundled with the JDK JConsole – JMX-compliant monitoring tool JDK Flight Recorder – method profiling, allocation profiling, and garbage collection related events. JProfiler – commercial Java profiler VisualVM – visual tool integrating commandline JDK tools for profiling and monitoring == Testing and quality assurance == Apache JMeter – load testing tool JaCoCo – Java code coverage library JArchitect – analyzes code quality, architecture, and dependencies. Jtest – software testing and static analysis JUnit – unit testing framework Mockito – open-source testing framework for Java PMD – static program analysis source code analyzer Selenium – browser automation for web app testing Spock – test framework SpotBugs (formerly FindBugs) – static analysis tool TestNG – testing framework inspired by JUnit and NUnit == Other == Apache XMLBeans –

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  • Radial basis function network

    Radial basis function network

    In the field of mathematical modeling, a radial basis function network is an artificial neural network that uses radial basis functions as activation functions. The output of the network is a linear combination of radial basis functions of the inputs and neuron parameters. Radial basis function networks have many uses, including function approximation, time series prediction, classification, and system control. They were first formulated in a 1988 paper by Broomhead and Lowe, both researchers at the Royal Signals and Radar Establishment. == Network architecture == Radial basis function (RBF) networks typically have three layers: an input layer, a hidden layer with a non-linear RBF activation function and a linear output layer. The input can be modeled as a vector of real numbers x ∈ R n {\displaystyle \mathbf {x} \in \mathbb {R} ^{n}} . The output of the network is then a scalar function of the input vector, φ : R n → R {\displaystyle \varphi :\mathbb {R} ^{n}\to \mathbb {R} } , and is given by φ ( x ) = ∑ i = 1 N a i ρ ( | | x − c i | | ) {\displaystyle \varphi (\mathbf {x} )=\sum _{i=1}^{N}a_{i}\rho (||\mathbf {x} -\mathbf {c} _{i}||)} where N {\displaystyle N} is the number of neurons in the hidden layer, c i {\displaystyle \mathbf {c} _{i}} is the center vector for neuron i {\displaystyle i} , and a i {\displaystyle a_{i}} is the weight of neuron i {\displaystyle i} in the linear output neuron. Functions that depend only on the distance from a center vector are radially symmetric about that vector, hence the name radial basis function. In the basic form, all inputs are connected to each hidden neuron. The norm is typically taken to be the Euclidean distance (although the Mahalanobis distance appears to perform better with pattern recognition) and the radial basis function is commonly taken to be Gaussian ρ ( ‖ x − c i ‖ ) = exp ⁡ [ − β i ‖ x − c i ‖ 2 ] {\displaystyle \rho {\big (}\left\Vert \mathbf {x} -\mathbf {c} _{i}\right\Vert {\big )}=\exp \left[-\beta _{i}\left\Vert \mathbf {x} -\mathbf {c} _{i}\right\Vert ^{2}\right]} . The Gaussian basis functions are local to the center vector in the sense that lim | | x | | → ∞ ρ ( ‖ x − c i ‖ ) = 0 {\displaystyle \lim _{||x||\to \infty }\rho (\left\Vert \mathbf {x} -\mathbf {c} _{i}\right\Vert )=0} i.e. changing parameters of one neuron has only a small effect for input values that are far away from the center of that neuron. Given certain mild conditions on the shape of the activation function, RBF networks are universal approximators on a compact subset of R n {\displaystyle \mathbb {R} ^{n}} . This means that an RBF network with enough hidden neurons can approximate any continuous function on a closed, bounded set with arbitrary precision. The parameters a i {\displaystyle a_{i}} , c i {\displaystyle \mathbf {c} _{i}} , and β i {\displaystyle \beta _{i}} are determined in a manner that optimizes the fit between φ {\displaystyle \varphi } and the data. === Normalization === ==== Normalized architecture ==== In addition to the above unnormalized architecture, RBF networks can be normalized. In this case the mapping is φ ( x ) = d e f ∑ i = 1 N a i ρ ( ‖ x − c i ‖ ) ∑ i = 1 N ρ ( ‖ x − c i ‖ ) = ∑ i = 1 N a i u ( ‖ x − c i ‖ ) {\displaystyle \varphi (\mathbf {x} )\ {\stackrel {\mathrm {def} }{=}}\ {\frac {\sum _{i=1}^{N}a_{i}\rho {\big (}\left\Vert \mathbf {x} -\mathbf {c} _{i}\right\Vert {\big )}}{\sum _{i=1}^{N}\rho {\big (}\left\Vert \mathbf {x} -\mathbf {c} _{i}\right\Vert {\big )}}}=\sum _{i=1}^{N}a_{i}u{\big (}\left\Vert \mathbf {x} -\mathbf {c} _{i}\right\Vert {\big )}} where u ( ‖ x − c i ‖ ) = d e f ρ ( ‖ x − c i ‖ ) ∑ j = 1 N ρ ( ‖ x − c j ‖ ) {\displaystyle u{\big (}\left\Vert \mathbf {x} -\mathbf {c} _{i}\right\Vert {\big )}\ {\stackrel {\mathrm {def} }{=}}\ {\frac {\rho {\big (}\left\Vert \mathbf {x} -\mathbf {c} _{i}\right\Vert {\big )}}{\sum _{j=1}^{N}\rho {\big (}\left\Vert \mathbf {x} -\mathbf {c} _{j}\right\Vert {\big )}}}} is known as a normalized radial basis function. ==== Theoretical motivation for normalization ==== There is theoretical justification for this architecture in the case of stochastic data flow. Assume a stochastic kernel approximation for the joint probability density P ( x ∧ y ) = 1 N ∑ i = 1 N ρ ( ‖ x − c i ‖ ) σ ( | y − e i | ) {\displaystyle P\left(\mathbf {x} \land y\right)={1 \over N}\sum _{i=1}^{N}\,\rho {\big (}\left\Vert \mathbf {x} -\mathbf {c} _{i}\right\Vert {\big )}\,\sigma {\big (}\left\vert y-e_{i}\right\vert {\big )}} where the weights c i {\displaystyle \mathbf {c} _{i}} and e i {\displaystyle e_{i}} are exemplars from the data and we require the kernels to be normalized ∫ ρ ( ‖ x − c i ‖ ) d n x = 1 {\displaystyle \int \rho {\big (}\left\Vert \mathbf {x} -\mathbf {c} _{i}\right\Vert {\big )}\,d^{n}\mathbf {x} =1} and ∫ σ ( | y − e i | ) d y = 1 {\displaystyle \int \sigma {\big (}\left\vert y-e_{i}\right\vert {\big )}\,dy=1} . The probability densities in the input and output spaces are P ( x ) = ∫ P ( x ∧ y ) d y = 1 N ∑ i = 1 N ρ ( ‖ x − c i ‖ ) {\displaystyle P\left(\mathbf {x} \right)=\int P\left(\mathbf {x} \land y\right)\,dy={1 \over N}\sum _{i=1}^{N}\,\rho {\big (}\left\Vert \mathbf {x} -\mathbf {c} _{i}\right\Vert {\big )}} and The expectation of y given an input x {\displaystyle \mathbf {x} } is φ ( x ) = d e f E ( y ∣ x ) = ∫ y P ( y ∣ x ) d y {\displaystyle \varphi \left(\mathbf {x} \right)\ {\stackrel {\mathrm {def} }{=}}\ E\left(y\mid \mathbf {x} \right)=\int y\,P\left(y\mid \mathbf {x} \right)dy} where P ( y ∣ x ) {\displaystyle P\left(y\mid \mathbf {x} \right)} is the conditional probability of y given x {\displaystyle \mathbf {x} } . The conditional probability is related to the joint probability through Bayes' theorem P ( y ∣ x ) = P ( x ∧ y ) P ( x ) {\displaystyle P\left(y\mid \mathbf {x} \right)={\frac {P\left(\mathbf {x} \land y\right)}{P\left(\mathbf {x} \right)}}} which yields φ ( x ) = ∫ y P ( x ∧ y ) P ( x ) d y {\displaystyle \varphi \left(\mathbf {x} \right)=\int y\,{\frac {P\left(\mathbf {x} \land y\right)}{P\left(\mathbf {x} \right)}}\,dy} . This becomes φ ( x ) = ∑ i = 1 N e i ρ ( ‖ x − c i ‖ ) ∑ i = 1 N ρ ( ‖ x − c i ‖ ) = ∑ i = 1 N e i u ( ‖ x − c i ‖ ) {\displaystyle \varphi \left(\mathbf {x} \right)={\frac {\sum _{i=1}^{N}e_{i}\rho {\big (}\left\Vert \mathbf {x} -\mathbf {c} _{i}\right\Vert {\big )}}{\sum _{i=1}^{N}\rho {\big (}\left\Vert \mathbf {x} -\mathbf {c} _{i}\right\Vert {\big )}}}=\sum _{i=1}^{N}e_{i}u{\big (}\left\Vert \mathbf {x} -\mathbf {c} _{i}\right\Vert {\big )}} when the integrations are performed. === Local linear models === It is sometimes convenient to expand the architecture to include local linear models. In that case the architectures become, to first order, φ ( x ) = ∑ i = 1 N ( a i + b i ⋅ ( x − c i ) ) ρ ( ‖ x − c i ‖ ) {\displaystyle \varphi \left(\mathbf {x} \right)=\sum _{i=1}^{N}\left(a_{i}+\mathbf {b} _{i}\cdot \left(\mathbf {x} -\mathbf {c} _{i}\right)\right)\rho {\big (}\left\Vert \mathbf {x} -\mathbf {c} _{i}\right\Vert {\big )}} and φ ( x ) = ∑ i = 1 N ( a i + b i ⋅ ( x − c i ) ) u ( ‖ x − c i ‖ ) {\displaystyle \varphi \left(\mathbf {x} \right)=\sum _{i=1}^{N}\left(a_{i}+\mathbf {b} _{i}\cdot \left(\mathbf {x} -\mathbf {c} _{i}\right)\right)u{\big (}\left\Vert \mathbf {x} -\mathbf {c} _{i}\right\Vert {\big )}} in the unnormalized and normalized cases, respectively. Here b i {\displaystyle \mathbf {b} _{i}} are weights to be determined. Higher order linear terms are also possible. This result can be written φ ( x ) = ∑ i = 1 2 N ∑ j = 1 n e i j v i j ( x − c i ) {\displaystyle \varphi \left(\mathbf {x} \right)=\sum _{i=1}^{2N}\sum _{j=1}^{n}e_{ij}v_{ij}{\big (}\mathbf {x} -\mathbf {c} _{i}{\big )}} where e i j = { a i , if i ∈ [ 1 , N ] b i j , if i ∈ [ N + 1 , 2 N ] {\displaystyle e_{ij}={\begin{cases}a_{i},&{\mbox{if }}i\in [1,N]\\b_{ij},&{\mbox{if }}i\in [N+1,2N]\end{cases}}} and v i j ( x − c i ) = d e f { δ i j ρ ( ‖ x − c i ‖ ) , if i ∈ [ 1 , N ] ( x i j − c i j ) ρ ( ‖ x − c i ‖ ) , if i ∈ [ N + 1 , 2 N ] {\displaystyle v_{ij}{\big (}\mathbf {x} -\mathbf {c} _{i}{\big )}\ {\stackrel {\mathrm {def} }{=}}\ {\begin{cases}\delta _{ij}\rho {\big (}\left\Vert \mathbf {x} -\mathbf {c} _{i}\right\Vert {\big )},&{\mbox{if }}i\in [1,N]\\\left(x_{ij}-c_{ij}\right)\rho {\big (}\left\Vert \mathbf {x} -\mathbf {c} _{i}\right\Vert {\big )},&{\mbox{if }}i\in [N+1,2N]\end{cases}}} in the unnormalized case and in the normalized case. Here δ i j {\displaystyle \delta _{ij}} is a Kronecker delta function defined as δ i j = { 1 , if i = j 0 , if i ≠ j {\displaystyle \delta _{ij}={\begin{cases}1,&{\mbox{if }}i=j\\0,&{\mbox{if }}i\neq j\end{cases}}} . == Training == RBF networks are typically trained from pairs of input and target values x ( t ) , y ( t ) {\displaystyle \mathbf {x} (t),y(t)} , t = 1 , … , T {\displaystyle t=1,\dots ,T} by a two-step algorithm. In the first step, the center vectors c i {\displaystyle \mathbf {c} _{i}} of the RBF functions in the hidden layer

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  • Automated Pain Recognition

    Automated Pain Recognition

    Automated Pain Recognition (APR) is a method for objectively measuring pain and at the same time represents an interdisciplinary research area that comprises elements of medicine, psychology, psychobiology, and computer science. The focus is on computer-aided objective recognition of pain, implemented on the basis of machine learning. Automated pain recognition allows for the valid, reliable detection and monitoring of pain in people who are unable to communicate verbally. The underlying machine learning processes are trained and validated in advance by means of unimodal or multimodal body signals. Signals used to detect pain may include facial expressions or gestures and may also be of a (psycho-)physiological or paralinguistic nature. To date, the focus has been on identifying pain intensity, but visionary efforts are also being made to recognize the quality, site, and temporal course of pain. However, the clinical implementation of this approach is a controversial topic in the field of pain research. Critics of automated pain recognition argue that pain diagnosis can only be performed subjectively by humans. == Background == Pain diagnosis under conditions where verbal reporting is restricted - such as in verbally and/or cognitively impaired people or in patients who are sedated or mechanically ventilated - is based on behavioral observations by trained professionals. However, all known observation procedures (e.g., Zurich Observation Pain Assessment (ZOPA)); Pain Assessment in Advanced Dementia Scale (PAINAD) require a great deal of specialist expertise. These procedures can be made more difficult by perception- and interpretation-related misjudgments on the part of the observer. With regard to the differences in design, methodology, evaluation sample, and conceptualization of the phenomenon of pain, it is difficult to compare the quality criteria of the various tools. Even if trained personnel could theoretically record pain intensity several times a day using observation instruments, it would not be possible to measure it every minute or second. In this respect, the goal of automated pain recognition is to use valid, robust pain response patterns that can be recorded multimodally for a temporally dynamic, high-resolution, automated pain intensity recognition system. == Procedure == For automated pain recognition, pain-relevant parameters are usually recorded using non-invasive sensor technology, which captures data on the (physical) responses of the person in pain. This can be achieved with camera technology that captures facial expressions, gestures, or posture, while audio sensors record paralinguistic features. (Psycho-)physiological information such as muscle tone and heart rate can be collected via biopotential sensors (electrodes). Pain recognition requires the extraction of meaningful characteristics or patterns from the data collected. This is achieved using machine learning techniques that are able to provide an assessment of the pain after training (learning), e.g., "no pain," "mild pain," or "severe pain." == Parameters == Although the phenomenon of pain comprises different components (sensory discriminative, affective (emotional), cognitive, vegetative, and (psycho-)motor), automated pain recognition currently relies on the measurable parameters of pain responses. These can be divided roughly into the two main categories of "physiological responses" and "behavioral responses". === Physiological responses === In humans, pain almost always initiates autonomic nervous processes that are reflected measurably in various physiological signals. ==== Physiological signals ==== Measurements can include electrodermal activity (EDA, also skin conductance), electromyography (EMG), electrocardiogram (ECG), blood volume pulse (BVP), electroencephalogram (EEG), respiration, and body temperature, which are regulatory mechanisms of the sympathetic and parasympathetic systems. Physiological signals are mainly recorded using special non-invasive surface electrodes (for EDA, EMG, ECG, and EEG), a blood volume pulse sensor (BVP), a respiratory belt (respiration), and a thermal sensor (body temperature). Endocrinological and immunological parameters can also be recorded, but this requires measures that are somewhat invasive (e.g., blood sampling). === Behavioral responses === Behavioral responses to pain fulfil two functions: protection of the body (e.g., through protective reflexes) and external communication of the pain (e.g., as a cry for help). The responses are particularly evident in facial expressions, gestures, and paralinguistic features. ==== Facial expressions ==== Behavioral signals captured comprise facial expression patterns (expressive behavior), which are measured with the aid of video signals. Facial expression recognition is based on the everyday clinical observation that pain often manifests itself in the patient's facial expressions but that this is not necessarily always the case, since facial expressions can be inhibited through self-control. Despite the possibility that facial expressions may be influenced consciously, facial expression behavior represents an essential source of information for pain diagnosis and is thus also a source of information for automatic pain recognition. One advantage of video-based facial expression recognition is the contact-free measurement of the face, provided that it can be captured on video, which is not possible in every position (e.g., lying face down) or may be limited by bandages covering the face. Facial expression analysis relies on rapid, spontaneous, and temporary changes in neuromuscular activity that lead to visually detectable changes in the face. ==== Gestures ==== Gestures are also captured predominantly using non-contact camera technology. Motor pain responses vary and are strongly dependent on the type and cause of the pain. They range from abrupt protective reflexes (e.g., spontaneous retraction of extremities or doubling up) to agitation (pathological restlessness) and avoidance behavior (hesitant, cautious movements). ==== Paralinguistic features of language ==== Among other things, pain leads to nonverbal linguistic behavior that manifests itself in sounds such as sighing, gasping, moaning, whining, etc. Paralinguistic features are usually recorded using highly sensitive microphones. == Algorithms == After the recording, pre-processing (e.g., filtering), and extraction of relevant features, an optional information fusion can be performed. During this process, modalities from different signal sources are merged to generate new or more precise knowledge. The pain is classified using machine learning processes. The method chosen has a significant influence on the recognition rate and depends greatly on the quality and granularity of the underlying data. Similar to the field of affective computing, the following classifiers are currently being used: Support Vector Machine (SVM): The goal of an SVM is to find a clearly defined optimal hyperplane with the greatest minimal distance to two (or more) classes to be separated. The hyperplane acts as a decision function for classifying an unknown pattern. Random Forest (RF): RF is based on the composition of random, uncorrelated decision trees. An unknown pattern is judged individually by each tree and assigned to a class. The final classification of the patterns by the RF is then based on a majority decision. k-Nearest Neighbors (k-NN): The k-NN algorithm classifies an unknown object using the class label that most commonly classifies the k neighbors closest to it. Its neighbors are determined using a selected similarity measure (e.g., Euclidean distance, Jaccard coefficient, etc.). Artificial neural networks (ANNs): ANNs are inspired by biological neural networks and model their organizational principles and processes in a very simplified manner. Class patterns are learned by adjusting the weights of the individual neuronal connections. == Databases == In order to classify pain in a valid manner, it is necessary to create representative, reliable, and valid pain databases that are available to the machine learner for training. An ideal database would be sufficiently large and would consist of natural (not experimental), high-quality pain responses. However, natural responses are difficult to record and can only be obtained to a limited extent; in most cases they are characterized by suboptimal quality. The databases currently available therefore contain experimental or quasi-experimental pain responses, and each database is based on a different pain model. The following list shows a selection of the most relevant pain databases (last updated: April 2020): UNBC-McMaster Shoulder Pain BioVid Heat Pain EmoPain SenseEmotion X-ITE Pain

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  • ARKA descriptors in QSAR

    ARKA descriptors in QSAR

    In computational chemistry and cheminformatics, ARKA descriptors in QSAR are a class of molecular descriptors used in quantitative structure–activity relationship (QSAR) modeling (or related approaches such as QSPR and QSTR), a computational method for predicting the biological activity or toxicity of chemical compounds based on their molecular structure. Molecular descriptors are numerical values that summarize information about a molecule's structure, topology, geometry, or physicochemical properties in a form suitable for machine learning or statistical modeling. ARKA (Arithmetic Residuals in K-Groups Analysis) descriptors differ from traditional descriptors by encoding atomic-level information through recursive autoregression techniques, which aim to capture subtle structural patterns and improve predictive accuracy. They are designed to be both interpretable and well-suited to modeling nonlinear relationships in QSAR studies. == Comparisons == While QSAR is essentially a similarity-based approach, the occurrence of activity/property cliffs may greatly reduce the predictive accuracy of the developed models. The novel Arithmetic Residuals in K-groups Analysis (ARKA) approach is a supervised dimensionality reduction technique developed by the DTC Laboratory, Jadavpur University that can easily identify activity cliffs in a data set. Activity cliffs are similar in their structures but differ considerably in their activity. The basic idea of the ARKA descriptors is to group the conventional QSAR descriptors based on a predefined criterion and then assign weightage to each descriptor in each group. ARKA descriptors have also been used to develop classification-based and regression-based QSAR models with acceptable quality statistics. The ARKA descriptors have been used for the identification of activity cliffs in QSAR studies and/or model development by multiple researchers. A tutorial presentation on the ARKA descriptors is available. Recently a multi-class ARKA framework has been proposed for improved q-RASAR model generation.

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  • Legendre moment

    Legendre moment

    In mathematics, Legendre moments are a type of image moment and are achieved by using the Legendre polynomial. Legendre moments are used in areas of image processing including: pattern and object recognition, image indexing, line fitting, feature extraction, edge detection, and texture analysis. Legendre moments have been studied as a means to reduce image moment calculation complexity by limiting the amount of information redundancy through approximation. == Legendre moments == Source: With order of m + n, and object intensity function f(x,y): L m n = ( 2 m + 1 ) ( 2 n + 1 ) 4 ∫ − 1 1 ∫ − 1 1 P m ( x ) P n ( y ) f ( x , y ) d x d y {\displaystyle L_{mn}={\frac {(2m+1)(2n+1)}{4}}\int \limits _{-1}^{1}\int \limits _{-1}^{1}P_{m}(x)P_{n}(y)f(x,y)\,dx\,dy} where m,n = 1, 2, 3, ...∞ with the nth-order Legendre polynomials being: P n ( x ) = ∑ k = 0 n a k , n x k = ( − 1 ) n 2 n n ! ( d d x ) [ ( 1 − x 2 ) n ] {\displaystyle P_{n}(x)=\sum _{k=0}^{n}a_{k,n}x^{k}={\frac {(-1)^{n}}{2^{n}n!}}\left({\frac {d}{dx}}\right)[(1-x^{2})^{n}]} which can also be written: P n ( x ) = ∑ k = 0 D ( n ) ( − 1 ) k ( 2 n − 2 k ) ! 2 n k ! ( n − k ) ! ( n − 2 k ) ! x n − 2 k = ( 2 n ) ! 2 n ( n ! ) 2 x n − ( 2 n − 2 ) ! 2 n 1 ! ( n − 1 ) ! ( n − 2 ) ! x n − 2 + ⋯ {\displaystyle {\begin{aligned}P_{n}(x)&=\sum _{k=0}^{D(n)}(-1)^{k}{\frac {(2n-2k)!}{2^{n}k!(n-k)!(n-2k)!}}x^{n-2k}\\[5pt]&={\frac {(2n)!}{2^{n}(n!)^{2}}}x^{n}-{\frac {(2n-2)!}{2^{n}1!(n-1)!(n-2)!}}x^{n-2}+\cdots \end{aligned}}} where D(n) = floor(n/2). The set of Legendre polynomials {Pn(x)} form an orthogonal set on the interval [−1,1]: ∫ − 1 1 P n ( x ) P m ( x ) d x = 2 2 n + 1 δ n m {\displaystyle \int _{-1}^{1}P_{n}(x)P_{m}(x)\,dx={\frac {2}{2n+1}}\delta _{nm}} A recurrence relation can be used to compute the Legendre polynomial: ( n + 1 ) P n + 1 ( x ) − ( 2 n + 1 ) x P n ( x ) + n P n − 1 ( x ) = 0 {\displaystyle (n+1)P_{n+1}(x)-(2n+1)xP_{n}(x)+nP_{n-1}(x)=0} f(x,y) can be written as an infinite series expansion in terms of Legendre polynomials [−1 ≤ x,y ≤ 1.]: f ( x , y ) = ∑ m = 0 ∞ ∑ n = 0 ∞ λ m n P m ( x ) P n ( y ) {\displaystyle f(x,y)=\sum _{m=0}^{\infty }\sum _{n=0}^{\infty }\lambda _{mn}P_{m}(x)P_{n}(y)}

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  • Multinomial logistic regression

    Multinomial logistic regression

    In statistics, multinomial logistic regression is a classification method that generalizes logistic regression to multiclass problems, i.e. with more than two possible discrete outcomes. That is, it is a model that is used to predict the probabilities of the different possible outcomes of a categorically distributed dependent variable, given a set of independent variables (which may be real-valued, binary-valued, categorical-valued, etc.). Multinomial logistic regression is known by a variety of other names, including polytomous LR, multiclass LR, softmax regression, multinomial logit (mlogit), the maximum entropy (MaxEnt) classifier, and the conditional maximum entropy model. == Background == Multinomial logistic regression is used when the dependent variable in question is nominal (equivalently categorical, meaning that it falls into any one of a set of categories that cannot be ordered in any meaningful way) and for which there are more than two categories. Some examples would be: Which major will a college student choose, given their grades, stated likes and dislikes, etc.? Which blood type does a person have, given the results of various diagnostic tests? In a hands-free mobile phone dialing application, which person's name was spoken, given various properties of the speech signal? Which candidate will a person vote for, given particular demographic characteristics? Which country will a firm locate an office in, given the characteristics of the firm and of the various candidate countries? These are all statistical classification problems. They all have in common a dependent variable to be predicted that comes from one of a limited set of items that cannot be meaningfully ordered, as well as a set of independent variables (also known as features, explanators, etc.), which are used to predict the dependent variable. Multinomial logistic regression is a particular solution to classification problems that use a linear combination of the observed features and some problem-specific parameters to estimate the probability of each particular value of the dependent variable. The best values of the parameters for a given problem are usually determined from some training data (e.g. some people for whom both the diagnostic test results and blood types are known, or some examples of known words being spoken). == Assumptions == The multinomial logistic model assumes that data are case-specific; that is, each independent variable has a single value for each case. As with other types of regression, there is no need for the independent variables to be statistically independent from each other (unlike, for example, in a naive Bayes classifier); however, collinearity is assumed to be relatively low, as it becomes difficult to differentiate between the impact of several variables if this is not the case. If the multinomial logit is used to model choices, it relies on the assumption of independence of irrelevant alternatives (IIA), which is not always desirable. This assumption states that the odds of preferring one class over another do not depend on the presence or absence of other "irrelevant" alternatives. For example, the relative probabilities of taking a car or bus to work do not change if a bicycle is added as an additional possibility. This allows the choice of K alternatives to be modeled as a set of K − 1 independent binary choices, in which one alternative is chosen as a "pivot" and the other K − 1 compared against it, one at a time. The IIA hypothesis is a core hypothesis in rational choice theory; however numerous studies in psychology show that individuals often violate this assumption when making choices. An example of a problem case arises if choices include a car and a blue bus. Suppose the odds ratio between the two is 1 : 1. Now if the option of a red bus is introduced, a person may be indifferent between a red and a blue bus, and hence may exhibit a car : blue bus : red bus odds ratio of 1 : 0.5 : 0.5, thus maintaining a 1 : 1 ratio of car : any bus while adopting a changed car : blue bus ratio of 1 : 0.5. Here the red bus option was not in fact irrelevant, because a red bus was a perfect substitute for a blue bus. If the multinomial logit is used to model choices, it may in some situations impose too much constraint on the relative preferences between the different alternatives. It is especially important to take into account if the analysis aims to predict how choices would change if one alternative were to disappear (for instance if one political candidate withdraws from a three candidate race). Other models like the nested logit or the multinomial probit may be used in such cases as they allow for violation of the IIA. == Model == === Introduction === There are multiple equivalent ways to describe the mathematical model underlying multinomial logistic regression. This can make it difficult to compare different treatments of the subject in different texts. The article on logistic regression presents a number of equivalent formulations of simple logistic regression, and many of these have analogues in the multinomial logit model. The idea behind all of them, as in many other statistical classification techniques, is to construct a linear predictor function that constructs a score from a set of weights that are linearly combined with the explanatory variables (features) of a given observation using a dot product: score ⁡ ( X i , k ) = β k ⋅ X i , {\displaystyle \operatorname {score} (\mathbf {X} _{i},k)={\boldsymbol {\beta }}_{k}\cdot \mathbf {X} _{i},} where Xi is the vector of explanatory variables describing observation i, βk is a vector of weights (or regression coefficients) corresponding to outcome k, and score(Xi, k) is the score associated with assigning observation i to category k. In discrete choice theory, where observations represent people and outcomes represent choices, the score is considered the utility associated with person i choosing outcome k. The predicted outcome is the one with the highest score. The difference between the multinomial logit model and numerous other methods, models, algorithms, etc. with the same basic setup (the perceptron algorithm, support vector machines, linear discriminant analysis, etc.) is the procedure for determining (training) the optimal weights/coefficients and the way that the score is interpreted. In particular, in the multinomial logit model, the score can directly be converted to a probability value, indicating the probability of observation i choosing outcome k given the measured characteristics of the observation. This provides a principled way of incorporating the prediction of a particular multinomial logit model into a larger procedure that may involve multiple such predictions, each with a possibility of error. Without such means of combining predictions, errors tend to multiply. For example, imagine a large predictive model that is broken down into a series of submodels where the prediction of a given submodel is used as the input of another submodel, and that prediction is in turn used as the input into a third submodel, etc. If each submodel has 90% accuracy in its predictions, and there are five submodels in series, then the overall model has only 0.95 = 59% accuracy. If each submodel has 80% accuracy, then overall accuracy drops to 0.85 = 33% accuracy. This issue is known as error propagation and is a serious problem in real-world predictive models, which are usually composed of numerous parts. Predicting probabilities of each possible outcome, rather than simply making a single optimal prediction, is one means of alleviating this issue. === Setup === The basic setup is the same as in logistic regression, the only difference being that the dependent variables are categorical rather than binary, i.e. there are K possible outcomes rather than just two. The following description is somewhat shortened; for more details, consult the logistic regression article. ==== Data points ==== Specifically, it is assumed that we have a series of N observed data points. Each data point i (ranging from 1 to N) consists of a set of M explanatory variables x1,i ... xM,i (also known as independent variables, predictor variables, features, etc.), and an associated categorical outcome Yi (also known as dependent variable, response variable), which can take on one of K possible values. These possible values represent logically separate categories (e.g. different political parties, blood types, etc.), and are often described mathematically by arbitrarily assigning each a number from 1 to K. The explanatory variables and outcome represent observed properties of the data points, and are often thought of as originating in the observations of N "experiments" — although an "experiment" may consist of nothing more than gathering data. The goal of multinomial logistic regression is to construct a model that explains the relationship between the explanatory variables and the outcome, so tha

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  • Sufficient dimension reduction

    Sufficient dimension reduction

    In statistics, sufficient dimension reduction (SDR) is a paradigm for analyzing data that combines the ideas of dimension reduction with the concept of sufficiency. Dimension reduction has long been a primary goal of regression analysis. Given a response variable y and a p-dimensional predictor vector x {\displaystyle {\textbf {x}}} , regression analysis aims to study the distribution of y ∣ x {\displaystyle y\mid {\textbf {x}}} , the conditional distribution of y {\displaystyle y} given x {\displaystyle {\textbf {x}}} . A dimension reduction is a function R ( x ) {\displaystyle R({\textbf {x}})} that maps x {\displaystyle {\textbf {x}}} to a subset of R k {\displaystyle \mathbb {R} ^{k}} , k < p, thereby reducing the dimension of x {\displaystyle {\textbf {x}}} . For example, R ( x ) {\displaystyle R({\textbf {x}})} may be one or more linear combinations of x {\displaystyle {\textbf {x}}} . A dimension reduction R ( x ) {\displaystyle R({\textbf {x}})} is said to be sufficient if the distribution of y ∣ R ( x ) {\displaystyle y\mid R({\textbf {x}})} is the same as that of y ∣ x {\displaystyle y\mid {\textbf {x}}} . In other words, no information about the regression is lost in reducing the dimension of x {\displaystyle {\textbf {x}}} if the reduction is sufficient. == Graphical motivation == In a regression setting, it is often useful to summarize the distribution of y ∣ x {\displaystyle y\mid {\textbf {x}}} graphically. For instance, one may consider a scatterplot of y {\displaystyle y} versus one or more of the predictors or a linear combination of the predictors. A scatterplot that contains all available regression information is called a sufficient summary plot. When x {\displaystyle {\textbf {x}}} is high-dimensional, particularly when p ≥ 3 {\displaystyle p\geq 3} , it becomes increasingly challenging to construct and visually interpret sufficiency summary plots without reducing the data. Even three-dimensional scatter plots must be viewed via a computer program, and the third dimension can only be visualized by rotating the coordinate axes. However, if there exists a sufficient dimension reduction R ( x ) {\displaystyle R({\textbf {x}})} with small enough dimension, a sufficient summary plot of y {\displaystyle y} versus R ( x ) {\displaystyle R({\textbf {x}})} may be constructed and visually interpreted with relative ease. Hence sufficient dimension reduction allows for graphical intuition about the distribution of y ∣ x {\displaystyle y\mid {\textbf {x}}} , which might not have otherwise been available for high-dimensional data. Most graphical methodology focuses primarily on dimension reduction involving linear combinations of x {\displaystyle {\textbf {x}}} . The rest of this article deals only with such reductions. == Dimension reduction subspace == Suppose R ( x ) = A T x {\displaystyle R({\textbf {x}})=A^{T}{\textbf {x}}} is a sufficient dimension reduction, where A {\displaystyle A} is a p × k {\displaystyle p\times k} matrix with rank k ≤ p {\displaystyle k\leq p} . Then the regression information for y ∣ x {\displaystyle y\mid {\textbf {x}}} can be inferred by studying the distribution of y ∣ A T x {\displaystyle y\mid A^{T}{\textbf {x}}} , and the plot of y {\displaystyle y} versus A T x {\displaystyle A^{T}{\textbf {x}}} is a sufficient summary plot. Without loss of generality, only the space spanned by the columns of A {\displaystyle A} need be considered. Let η {\displaystyle \eta } be a basis for the column space of A {\displaystyle A} , and let the space spanned by η {\displaystyle \eta } be denoted by S ( η ) {\displaystyle {\mathcal {S}}(\eta )} . It follows from the definition of a sufficient dimension reduction that F y ∣ x = F y ∣ η T x , {\displaystyle F_{y\mid x}=F_{y\mid \eta ^{T}x},} where F {\displaystyle F} denotes the appropriate distribution function. Another way to express this property is y ⊥ ⊥ x ∣ η T x , {\displaystyle y\perp \!\!\!\perp {\textbf {x}}\mid \eta ^{T}{\textbf {x}},} or y {\displaystyle y} is conditionally independent of x {\displaystyle {\textbf {x}}} , given η T x {\displaystyle \eta ^{T}{\textbf {x}}} . Then the subspace S ( η ) {\displaystyle {\mathcal {S}}(\eta )} is defined to be a dimension reduction subspace (DRS). === Structural dimensionality === For a regression y ∣ x {\displaystyle y\mid {\textbf {x}}} , the structural dimension, d {\displaystyle d} , is the smallest number of distinct linear combinations of x {\displaystyle {\textbf {x}}} necessary to preserve the conditional distribution of y ∣ x {\displaystyle y\mid {\textbf {x}}} . In other words, the smallest dimension reduction that is still sufficient maps x {\displaystyle {\textbf {x}}} to a subset of R d {\displaystyle \mathbb {R} ^{d}} . The corresponding DRS will be d-dimensional. === Minimum dimension reduction subspace === A subspace S {\displaystyle {\mathcal {S}}} is said to be a minimum DRS for y ∣ x {\displaystyle y\mid {\textbf {x}}} if it is a DRS and its dimension is less than or equal to that of all other DRSs for y ∣ x {\displaystyle y\mid {\textbf {x}}} . A minimum DRS S {\displaystyle {\mathcal {S}}} is not necessarily unique, but its dimension is equal to the structural dimension d {\displaystyle d} of y ∣ x {\displaystyle y\mid {\textbf {x}}} , by definition. If S {\displaystyle {\mathcal {S}}} has basis η {\displaystyle \eta } and is a minimum DRS, then a plot of y versus η T x {\displaystyle \eta ^{T}{\textbf {x}}} is a minimal sufficient summary plot, and it is (d + 1)-dimensional. == Central subspace == If a subspace S {\displaystyle {\mathcal {S}}} is a DRS for y ∣ x {\displaystyle y\mid {\textbf {x}}} , and if S ⊂ S drs {\displaystyle {\mathcal {S}}\subset {\mathcal {S}}_{\text{drs}}} for all other DRSs S drs {\displaystyle {\mathcal {S}}_{\text{drs}}} , then it is a central dimension reduction subspace, or simply a central subspace, and it is denoted by S y ∣ x {\displaystyle {\mathcal {S}}_{y\mid x}} . In other words, a central subspace for y ∣ x {\displaystyle y\mid {\textbf {x}}} exists if and only if the intersection ⋂ S drs {\textstyle \bigcap {\mathcal {S}}_{\text{drs}}} of all dimension reduction subspaces is also a dimension reduction subspace, and that intersection is the central subspace S y ∣ x {\displaystyle {\mathcal {S}}_{y\mid x}} . The central subspace S y ∣ x {\displaystyle {\mathcal {S}}_{y\mid x}} does not necessarily exist because the intersection ⋂ S drs {\textstyle \bigcap {\mathcal {S}}_{\text{drs}}} is not necessarily a DRS. However, if S y ∣ x {\displaystyle {\mathcal {S}}_{y\mid x}} does exist, then it is also the unique minimum dimension reduction subspace. === Existence of the central subspace === While the existence of the central subspace S y ∣ x {\displaystyle {\mathcal {S}}_{y\mid x}} is not guaranteed in every regression situation, there are some rather broad conditions under which its existence follows directly. For example, consider the following proposition from Cook (1998): Let S 1 {\displaystyle {\mathcal {S}}_{1}} and S 2 {\displaystyle {\mathcal {S}}_{2}} be dimension reduction subspaces for y ∣ x {\displaystyle y\mid {\textbf {x}}} . If x {\displaystyle {\textbf {x}}} has density f ( a ) > 0 {\displaystyle f(a)>0} for all a ∈ Ω x {\displaystyle a\in \Omega _{x}} and f ( a ) = 0 {\displaystyle f(a)=0} everywhere else, where Ω x {\displaystyle \Omega _{x}} is convex, then the intersection S 1 ∩ S 2 {\displaystyle {\mathcal {S}}_{1}\cap {\mathcal {S}}_{2}} is also a dimension reduction subspace. It follows from this proposition that the central subspace S y ∣ x {\displaystyle {\mathcal {S}}_{y\mid x}} exists for such x {\displaystyle {\textbf {x}}} . == Methods for dimension reduction == There are many existing methods for dimension reduction, both graphical and numeric. For example, sliced inverse regression (SIR) and sliced average variance estimation (SAVE) were introduced in the 1990s and continue to be widely used. Although SIR was originally designed to estimate an effective dimension reducing subspace, it is now understood that it estimates only the central subspace, which is generally different. More recent methods for dimension reduction include likelihood-based sufficient dimension reduction, estimating the central subspace based on the inverse third moment (or kth moment), estimating the central solution space, graphical regression, envelope model, and the principal support vector machine. For more details on these and other methods, consult the statistical literature. Principal components analysis (PCA) and similar methods for dimension reduction are not based on the sufficiency principle. === Example: linear regression === Consider the regression model y = α + β T x + ε , where ε ⊥ ⊥ x . {\displaystyle y=\alpha +\beta ^{T}{\textbf {x}}+\varepsilon ,{\text{ where }}\varepsilon \perp \!\!\!\perp {\textbf {x}}.} Note that the distribution of y ∣ x {\displaystyle y\mid {\textbf {x}}} is the same as the distribution of y ∣ β T x {\displ

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