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  • North Atlantic Population Project

    North Atlantic Population Project

    The North Atlantic Population Project (NAPP) is a collaboration of historical demographers in Britain, Canada, Denmark, Germany, Iceland, Norway, and Sweden to produce a massive census microdata collection for the North Atlantic Region in the late-nineteenth century. The database includes complete individual-level census enumerations for each country, and provides information on over 110 million people. This large scale allows detailed analysis of small geographic areas and population subgroups. The NAPP database is designed to be compatible with the Integrated Public Use Microdata Series (IPUMS), and is disseminated through the IPUMS data-access system at the Minnesota Population Center, University of Minnesota. Major collaborators on the project include Lisa Dillon, University of Montreal; Chad Gaffield, University of Ottawa; Ólöf Garðarsdóttir, Statistics Iceland; Marianne Jarnes Erikstad, University of Tromsø; Jan Oldervall University of Bergen; Evan Roberts, University of Minnesota; Steven Ruggles, University of Minnesota; Kevin Schürer, UK Data Archive; Gunnar Thorvaldsen, University of Tromsø; and Matthew Woollard, UK Data Archive. The project is also coordinated by the Minnesota Population Center at the University of Minnesota.

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  • Boosting (machine learning)

    Boosting (machine learning)

    In machine learning (ML), boosting is an ensemble learning method that combines a set of less accurate models (called "weak learners") to create a single, highly accurate model (a "strong learner"). Unlike other ensemble methods that build models in parallel (such as bagging), boosting algorithms build models sequentially. Each new model in the sequence is trained to correct the errors made by its predecessors. This iterative process allows the overall model to improve its accuracy, particularly by reducing bias. Boosting is a popular and effective technique used in supervised learning for both classification and regression tasks. The theoretical foundation for boosting came from a question posed by Kearns and Valiant (1988, 1989): "Can a set of weak learners create a single strong learner?" A weak learner is defined as a classifier that performs only slightly better than random guessing, whereas a strong learner is a classifier that is highly correlated with the true classification. Robert Schapire's affirmative answer to this question in a 1990 paper led to the development of practical boosting algorithms. The first such algorithm was developed by Schapire, with Freund and Schapire later developing AdaBoost, which remains a foundational example of boosting. == Algorithms == While boosting is not algorithmically constrained, most boosting algorithms consist of iteratively learning weak classifiers with respect to a distribution and adding them to a final strong classifier. When they are added, they are weighted in a way that is related to the weak learners' accuracy. After a weak learner is added, the data weights are readjusted, known as "re-weighting". Misclassified input data gain a higher weight and examples that are classified correctly lose weight. Thus, future weak learners focus more on the examples that previous weak learners misclassified. There are many boosting algorithms. The original ones, proposed by Robert Schapire (a recursive majority gate formulation), and Yoav Freund (boost by majority), were not adaptive and could not take full advantage of the weak learners. Schapire and Freund then developed AdaBoost, an adaptive boosting algorithm that won the prestigious Gödel Prize. Only algorithms that are provable boosting algorithms in the probably approximately correct learning formulation can accurately be called boosting algorithms. Other algorithms that are similar in spirit to boosting algorithms are sometimes called "leveraging algorithms", although they are also sometimes incorrectly called boosting algorithms. The main variation between many boosting algorithms is their method of weighting training data points and hypotheses. AdaBoost is very popular and the most significant historically as it was the first algorithm that could adapt to the weak learners. It is often the basis of introductory coverage of boosting in university machine learning courses. There are many more recent algorithms such as LPBoost, TotalBoost, BrownBoost, xgboost, MadaBoost, LogitBoost, CatBoost and others. Many boosting algorithms fit into the AnyBoost framework, which shows that boosting performs gradient descent in a function space using a convex cost function. == Object categorization in computer vision == Given images containing various known objects in the world, a classifier can be learned from them to automatically classify the objects in future images. Simple classifiers built based on some image feature of the object tend to be weak in categorization performance. Using boosting methods for object categorization is a way to unify the weak classifiers in a special way to boost the overall ability of categorization. === Problem of object categorization === Object categorization is a typical task of computer vision that involves determining whether or not an image contains some specific category of object. The idea is closely related with recognition, identification, and detection. Appearance based object categorization typically contains feature extraction, learning a classifier, and applying the classifier to new examples. There are many ways to represent a category of objects, e.g. from shape analysis, bag of words models, or local descriptors such as SIFT, etc. Examples of supervised classifiers are Naive Bayes classifiers, support vector machines, mixtures of Gaussians, and neural networks. However, research has shown that object categories and their locations in images can be discovered in an unsupervised manner as well. === Status quo for object categorization === The recognition of object categories in images is a challenging problem in computer vision, especially when the number of categories is large. This is due to high intra class variability and the need for generalization across variations of objects within the same category. Objects within one category may look quite different. Even the same object may appear unalike under different viewpoint, scale, and illumination. Background clutter and partial occlusion add difficulties to recognition as well. Humans are able to recognize thousands of object types, whereas most of the existing object recognition systems are trained to recognize only a few, e.g. human faces, cars, simple objects, etc. Research has been very active on dealing with more categories and enabling incremental additions of new categories, and although the general problem remains unsolved, several multi-category objects detectors (for up to hundreds or thousands of categories) have been developed. One means is by feature sharing and boosting. === Boosting for binary categorization === AdaBoost can be used for face detection as an example of binary categorization. The two categories are faces versus background. The general algorithm is as follows: Form a large set of simple features Initialize weights for training images For T rounds Normalize the weights For available features from the set, train a classifier using a single feature and evaluate the training error Choose the classifier with the lowest error Update the weights of the training images: increase if classified wrongly by this classifier, decrease if correctly Form the final strong classifier as the linear combination of the T classifiers (coefficient larger if training error is small) After boosting, a classifier constructed from 200 features could yield a 95% detection rate under a 10 − 5 {\displaystyle 10^{-5}} false positive rate. Another application of boosting for binary categorization is a system that detects pedestrians using patterns of motion and appearance. This work is the first to combine both motion information and appearance information as features to detect a walking person. It takes a similar approach to the Viola-Jones object detection framework. === Boosting for multi-class categorization === Compared with binary categorization, multi-class categorization looks for common features that can be shared across the categories at the same time. They turn to be more generic edge like features. During learning, the detectors for each category can be trained jointly. Compared with training separately, it generalizes better, needs less training data, and requires fewer features to achieve the same performance. The main flow of the algorithm is similar to the binary case. What is different is that a measure of the joint training error shall be defined in advance. During each iteration the algorithm chooses a classifier of a single feature (features that can be shared by more categories shall be encouraged). This can be done via converting multi-class classification into a binary one (a set of categories versus the rest), or by introducing a penalty error from the categories that do not have the feature of the classifier. In the paper "Sharing visual features for multiclass and multiview object detection", A. Torralba et al. used GentleBoost for boosting and showed that when training data is limited, learning via sharing features does a much better job than no sharing, given same boosting rounds. Also, for a given performance level, the total number of features required (and therefore the run time cost of the classifier) for the feature sharing detectors, is observed to scale approximately logarithmically with the number of class, i.e., slower than linear growth in the non-sharing case. Similar results are shown in the paper "Incremental learning of object detectors using a visual shape alphabet", yet the authors used AdaBoost for boosting. == Convex vs. non-convex boosting algorithms == Boosting algorithms can be based on convex or non-convex optimization algorithms. Convex algorithms, such as AdaBoost and LogitBoost, can be "defeated" by random noise such that they can't learn basic and learnable combinations of weak hypotheses. This limitation was pointed out by Long & Servedio in 2008. However, by 2009, multiple authors demonstrated that boosting algorithms based on non-convex optimization, such as BrownBoost, can learn from nois

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  • Analogical modeling

    Analogical modeling

    Analogical modeling (AM) is a formal theory of exemplar based analogical reasoning, proposed by Royal Skousen, professor of Linguistics and English language at Brigham Young University in Provo, Utah. It is applicable to language modeling and other categorization tasks. Analogical modeling is related to connectionism and nearest neighbor approaches, in that it is data-based rather than abstraction-based; but it is distinguished by its ability to cope with imperfect datasets (such as caused by simulated short term memory limits) and to base predictions on all relevant segments of the dataset, whether near or far. In language modeling, AM has successfully predicted empirically valid forms for which no theoretical explanation was known (see the discussion of Finnish morphology in Skousen et al. 2002). == Implementation == === Overview === An exemplar-based model consists of a general-purpose modeling engine and a problem-specific dataset. Within the dataset, each exemplar (a case to be reasoned from, or an informative past experience) appears as a feature vector: a row of values for the set of parameters that define the problem. For example, in a spelling-to-sound task, the feature vector might consist of the letters of a word. Each exemplar in the dataset is stored with an outcome, such as a phoneme or phone to be generated. When the model is presented with a novel situation (in the form of an outcome-less feature vector), the engine algorithmically sorts the dataset to find exemplars that helpfully resemble it, and selects one, whose outcome is the model's prediction. The particulars of the algorithm distinguish one exemplar-based modeling system from another. In AM, we think of the feature values as characterizing a context, and the outcome as a behavior that occurs within that context. Accordingly, the novel situation is known as the given context. Given the known features of the context, the AM engine systematically generates all contexts that include it (all of its supracontexts), and extracts from the dataset the exemplars that belong to each. The engine then discards those supracontexts whose outcomes are inconsistent (this measure of consistency will be discussed further below), leaving an analogical set of supracontexts, and probabilistically selects an exemplar from the analogical set with a bias toward those in large supracontexts. This multilevel search exponentially magnifies the likelihood of a behavior's being predicted as it occurs reliably in settings that specifically resemble the given context. === Analogical modeling in detail === AM performs the same process for each case it is asked to evaluate. The given context, consisting of n variables, is used as a template to generate 2 n {\displaystyle 2^{n}} supracontexts. Each supracontext is a set of exemplars in which one or more variables have the same values that they do in the given context, and the other variables are ignored. In effect, each is a view of the data, created by filtering for some criteria of similarity to the given context, and the total set of supracontexts exhausts all such views. Alternatively, each supracontext is a theory of the task or a proposed rule whose predictive power needs to be evaluated. It is important to note that the supracontexts are not equal peers one with another; they are arranged by their distance from the given context, forming a hierarchy. If a supracontext specifies all of the variables that another one does and more, it is a subcontext of that other one, and it lies closer to the given context. (The hierarchy is not strictly branching; each supracontext can itself be a subcontext of several others, and can have several subcontexts.) This hierarchy becomes significant in the next step of the algorithm. The engine now chooses the analogical set from among the supracontexts. A supracontext may contain exemplars that only exhibit one behavior; it is deterministically homogeneous and is included. It is a view of the data that displays regularity, or a relevant theory that has never yet been disproven. A supracontext may exhibit several behaviors, but contain no exemplars that occur in any more specific supracontext (that is, in any of its subcontexts); in this case it is non-deterministically homogeneous and is included. Here there is no great evidence that a systematic behavior occurs, but also no counterargument. Finally, a supracontext may be heterogeneous, meaning that it exhibits behaviors that are found in a subcontext (closer to the given context), and also behaviors that are not. Where the ambiguous behavior of the nondeterministically homogeneous supracontext was accepted, this is rejected because the intervening subcontext demonstrates that there is a better theory to be found. The heterogeneous supracontext is therefore excluded. This guarantees that we see an increase in meaningfully consistent behavior in the analogical set as we approach the given context. With the analogical set chosen, each appearance of an exemplar (for a given exemplar may appear in several of the analogical supracontexts) is given a pointer to every other appearance of an exemplar within its supracontexts. One of these pointers is then selected at random and followed, and the exemplar to which it points provides the outcome. This gives each supracontext an importance proportional to the square of its size, and makes each exemplar likely to be selected in direct proportion to the sum of the sizes of all analogically consistent supracontexts in which it appears. Then, of course, the probability of predicting a particular outcome is proportional to the summed probabilities of all the exemplars that support it. (Skousen 2002, in Skousen et al. 2002, pp. 11–25, and Skousen 2003, both passim) === Formulas === Given a context with n {\displaystyle n} elements: total number of pairings: n 2 {\displaystyle n^{2}} number of agreements for outcome i: n i 2 {\displaystyle n_{i}^{2}} number of disagreements for outcome i: n i ( n − n i ) {\displaystyle n_{i}(n-n_{i})} total number of agreements: ∑ n i 2 {\displaystyle \sum {n_{i}^{2}}} total number of disagreements: ∑ n i ( n − n i ) = n 2 − ∑ n i 2 {\displaystyle \sum {n_{i}(n-n_{i})}=n^{2}-\sum {n_{i}^{2}}} === Example === This terminology is best understood through an example. In the example used in the second chapter of Skousen (1989), each context consists of three variables with potential values 0-3 Variable 1: 0,1,2,3 Variable 2: 0,1,2,3 Variable 3: 0,1,2,3 The two outcomes for the dataset are e and r, and the exemplars are: 3 1 0 e 0 3 2 r 2 1 0 r 2 1 2 r 3 1 1 r We define a network of pointers like so: The solid lines represent pointers between exemplars with matching outcomes; the dotted lines represent pointers between exemplars with non-matching outcomes. The statistics for this example are as follows: n = 5 {\displaystyle n=5} n r = 4 {\displaystyle n_{r}=4} n e = 1 {\displaystyle n_{e}=1} total number of pairings: n 2 = 25 {\displaystyle n^{2}=25} number of agreements for outcome r: n r 2 = 16 {\displaystyle n_{r}^{2}=16} number of agreements for outcome e: n e 2 = 1 {\displaystyle n_{e}^{2}=1} number of disagreements for outcome r: n r ( n − n r ) = 4 {\displaystyle n_{r}(n-n_{r})=4} number of disagreements for outcome e: n e ( n − n e ) = 4 {\displaystyle n_{e}(n-n_{e})=4} total number of agreements: n r 2 + n e 2 = 17 {\displaystyle n_{r}^{2}+n_{e}^{2}=17} total number of disagreements: n r ( n − n r ) + n e ( n − n e ) = n 2 − ( n r 2 + n e 2 ) = 8 {\displaystyle n_{r}(n-n_{r})+n_{e}(n-n_{e})=n^{2}-(n_{r}^{2}+n_{e}^{2})=8} uncertainty or fraction of disagreement: 8 / 25 = .32 {\displaystyle 8/25=.32} Behavior can only be predicted for a given context; in this example, let us predict the outcome for the context "3 1 2". To do this, we first find all of the contexts containing the given context; these contexts are called supracontexts. We find the supracontexts by systematically eliminating the variables in the given context; with m variables, there will generally be 2 m {\displaystyle 2^{m}} supracontexts. The following table lists each of the sub- and supracontexts; x means "not x", and - means "anything". These contexts are shown in the venn diagram below: The next step is to determine which exemplars belong to which contexts in order to determine which of the contexts are homogeneous. The table below shows each of the subcontexts, their behavior in terms of the given exemplars, and the number of disagreements within the behavior: Analyzing the subcontexts in the table above, we see that there is only 1 subcontext with any disagreements: "3 1 2", which in the dataset consists of "3 1 0 e" and "3 1 1 r". There are 2 disagreements in this subcontext; 1 pointing from each of the exemplars to the other (see the pointer network pictured above). Therefore, only supracontexts containing this subcontext will contain any disagreements. We use a simple rule to identify the homogeneous supraco

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  • Blockmodeling linked networks

    Blockmodeling linked networks

    Blockmodeling linked networks is an approach in blockmodeling in analysing the linked networks. Such approach is based on the generalized multilevel blockmodeling approach. The main objective of this approach is to achieve clustering of the nodes from all involved sets, while at the same time using all available information. At the same time, all one-mode and two-node networks, that are connected, are blockmodeled, which results in obtaining only one clustering, using nodes from each sets. Each cluster ideally contains only nodes from one set, which also allows the modeling of the links among clusters from different sets (through two-mode networks). This approach was introduced by Aleš Žiberna in 2014. Blockmodeling linked networks can be done using: separate analysis: blockmodeling each level separately; conversion approach: converting all one-mode networks to the same level and joining with two-mode networks; a true multilevel approach: one-mode and two-mode networks are blockmodeled at the same time, resulting in one clustering for nodes from each level.

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  • ZeroPC

    ZeroPC

    ZeroPC was a commercial webtop developed by ZeroDesktop, Inc. located in San Mateo, California. ZeroPC has been called a personal cloud OS. It mimicked the look, feel and functionality of the desktop environment of a real operating system. The software was launched in September 2011 through Disrupt SF 2011 event and recently selected to the finalist of SXSW 2012 in Innovative Web Technology category. ZeroPC is web-based and required a Java applet to operate bundled productivity tool Thinkfree. The web applications found on ZeroPC are built on Java in the back end. Features included drag-and-drop functionality, cloud dashboard and personal cloud storage meta services. ZeroPC belonged to a category of services that intended to turn the Web into a full-fledged platform by using Web services as a foundation along with presentation technologies that replicated the experience of desktop applications for users. ZeroPC aggregates content so users can easily access, transfer and share whatever content they want, using a web browser from any device. Its meta-cloud layer supports Dropbox, Box, SugarSync, OneDrive, 4Shared, Google Drive, Evernote, Picasa, Flickr, Instagram, Facebook, Twitter, and Photobucket. ZeroPC Cloud OS platform also provides extensive APIs for iOS and Android App developers. Some of the features found on ZeroPC are: File sharing, Webmail, Cloud Content Navigator, Instant messenger, Sticky Note, Audio/Video Player and Office productivity applications. ZeroPC 2.0 platform ran on AWS for free and paid users. Its platform is licensable to Telco and ISV for commercial purpose. Their clients are SFR, SK Telecom, Hancom and others. As of June 1, 2017, ZeroPC's servers were switched off completely, and ZeroPC is no longer in service since its parent company, NComputing, had launched Virtual Desktop Service in the cloud (AWS) to public. == Browser and Platform Compatibility == The ZeroPC web desktop was compatible with Mac OS X and Microsoft Windows platforms. It is certified to operate on Safari 6.0, Firefox 15.0.1, Google Chrome 22.0.1229.79 m and Internet Explorer 8 and 9. The ZeroPC front end user interface executes entirely within a web browser (see above) and uses HTML, some features of HTML5, JavaScript, AJAX and an optional Java plug-in. == Security == All communication between the ZeroPC front end user interface and the ZeroPC back end servers is encrypted using SSL (HTTPS) protocol. Furthermore, any content stored in the ZeroPC server-side repository is also encrypted using 256-bit Advanced Encryption Standard (AES-256) by Amazon S3 on AWS. ZeroPC users could connect their ZeroPC profile to other storage services such as Dropbox and Box. This connection allows the ZeroPC user to fully manage their content stored in these other storage services. To establish the connection ZeroPC rigorously adhered to the Oauth implementation provided by the target storage service. Upon completion of the Oauth process, ZeroPC stores the relevant access token in the user's profile. This token, along with all other sensitive password related data was encrypted using AES 256-bit key size. == Implementations == As noted above, the ZeroPC platform was hosted on Amazon Web Services infrastructure and is available to the general consumer. A user was allowed to sign up by selecting one of three account plans including a no-cost option. The ZeroPC could also be white-labeled for organizations wishing to provide this functionality to their own users. The white-label options include managed hosting on Amazon Web Services infrastructure and also installation within the organization's IT infrastructure. == User Access Points == The ZeroPC infrastructure provided user access to content and features in several different ways. As described in this article the user can access their information by signing into the ZeroPC web desktop. Additionally, ZeroPC offers native applications designed to run on popular mobile devices including smartphones and tablets. == Leadership == ZeroPC was founded by Chief Executive Officer, Young Song, an entrepreneur who previously founded NComputing, a $60 million venture-backed company. He also co-founded eMachines, Inc., a low-cost computer brand (later acquired by Gateway).

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  • Naive Bayes classifier

    Naive Bayes classifier

    In statistics, naive (sometimes simple or idiot's) Bayes classifiers are a family of "probabilistic classifiers" which assume that the features are conditionally independent, given the target class. In other words, a naive Bayes model assumes the information about the class provided by each variable is unrelated to the information from the others, with no information shared between the predictors. The highly unrealistic nature of this assumption, called the naive independence assumption, is what gives the classifier its name. These classifiers are some of the simplest Bayesian network models. Naive Bayes classifiers generally perform worse than more advanced models like logistic regressions, especially at quantifying uncertainty (with naive Bayes models often producing wildly overconfident probabilities). However, they are highly scalable, requiring only one parameter for each feature or predictor in a learning problem. Maximum-likelihood training can be done by evaluating a closed-form expression (simply by counting observations in each group), rather than the expensive iterative approximation algorithms required by most other models. Despite the use of Bayes' theorem in the classifier's decision rule, naive Bayes is not (necessarily) a Bayesian method, and naive Bayes models can be fit to data using either Bayesian or frequentist methods. == Introduction == Naive Bayes is a simple technique for constructing classifiers: models that assign class labels to problem instances, represented as vectors of feature values, where the class labels are drawn from some finite set. There is not a single algorithm for training such classifiers, but a family of algorithms based on a common principle: all naive Bayes classifiers assume that the value of a particular feature is independent of the value of any other feature, given the class variable. For example, a fruit may be considered to be an apple if it is red, round, and about 10 cm in diameter. A naive Bayes classifier considers each of these features to contribute independently to the probability that this fruit is an apple, regardless of any possible correlations between the color, roundness, and diameter features. In many practical applications, parameter estimation for naive Bayes models uses the method of maximum likelihood; in other words, one can work with the naive Bayes model without accepting Bayesian probability or using any Bayesian methods. Despite their naive design and apparently oversimplified assumptions, naive Bayes classifiers have worked quite well in many complex real-world situations. In 2004, an analysis of the Bayesian classification problem showed that there are sound theoretical reasons for the apparently implausible efficacy of naive Bayes classifiers. Still, a comprehensive comparison with other classification algorithms in 2006 showed that Bayes classification is outperformed by other approaches, such as boosted trees or random forests. An advantage of naive Bayes is that it only requires a small amount of training data to estimate the parameters necessary for classification. == Probabilistic model == Abstractly, naive Bayes is a conditional probability model: it assigns probabilities p ( C k ∣ x 1 , … , x n ) {\displaystyle p(C_{k}\mid x_{1},\ldots ,x_{n})} for each of the K possible outcomes or classes C k {\displaystyle C_{k}} given a problem instance to be classified, represented by a vector x = ( x 1 , … , x n ) {\displaystyle \mathbf {x} =(x_{1},\ldots ,x_{n})} encoding some n features (independent variables). The problem with the above formulation is that if the number of features n is large or if a feature can take on a large number of values, then basing such a model on probability tables is infeasible. The model must therefore be reformulated to make it more tractable. Using Bayes' theorem, the conditional probability can be decomposed as: p ( C k ∣ x ) = p ( C k ) p ( x ∣ C k ) p ( x ) {\displaystyle p(C_{k}\mid \mathbf {x} )={\frac {p(C_{k})\ p(\mathbf {x} \mid C_{k})}{p(\mathbf {x} )}}\,} In plain English, using Bayesian probability terminology, the above equation can be written as posterior = prior × likelihood evidence {\displaystyle {\text{posterior}}={\frac {{\text{prior}}\times {\text{likelihood}}}{\text{evidence}}}\,} In practice, there is interest only in the numerator of that fraction, because the denominator does not depend on C {\displaystyle C} and the values of the features x i {\displaystyle x_{i}} are given, so that the denominator is effectively constant. The numerator is equivalent to the joint probability model p ( C k , x 1 , … , x n ) {\displaystyle p(C_{k},x_{1},\ldots ,x_{n})\,} which can be rewritten as follows, using the chain rule for repeated applications of the definition of conditional probability: p ( C k , x 1 , … , x n ) = p ( x 1 , … , x n , C k ) = p ( x 1 ∣ x 2 , … , x n , C k ) p ( x 2 , … , x n , C k ) = p ( x 1 ∣ x 2 , … , x n , C k ) p ( x 2 ∣ x 3 , … , x n , C k ) p ( x 3 , … , x n , C k ) = ⋯ = p ( x 1 ∣ x 2 , … , x n , C k ) p ( x 2 ∣ x 3 , … , x n , C k ) ⋯ p ( x n − 1 ∣ x n , C k ) p ( x n ∣ C k ) p ( C k ) {\displaystyle {\begin{aligned}p(C_{k},x_{1},\ldots ,x_{n})&=p(x_{1},\ldots ,x_{n},C_{k})\\&=p(x_{1}\mid x_{2},\ldots ,x_{n},C_{k})\ p(x_{2},\ldots ,x_{n},C_{k})\\&=p(x_{1}\mid x_{2},\ldots ,x_{n},C_{k})\ p(x_{2}\mid x_{3},\ldots ,x_{n},C_{k})\ p(x_{3},\ldots ,x_{n},C_{k})\\&=\cdots \\&=p(x_{1}\mid x_{2},\ldots ,x_{n},C_{k})\ p(x_{2}\mid x_{3},\ldots ,x_{n},C_{k})\cdots p(x_{n-1}\mid x_{n},C_{k})\ p(x_{n}\mid C_{k})\ p(C_{k})\\\end{aligned}}} Now the "naive" conditional independence assumptions come into play: assume that all features in x {\displaystyle \mathbf {x} } are mutually independent, conditional on the category C k {\displaystyle C_{k}} . Under this assumption, p ( x i ∣ x i + 1 , … , x n , C k ) = p ( x i ∣ C k ) . {\displaystyle p(x_{i}\mid x_{i+1},\ldots ,x_{n},C_{k})=p(x_{i}\mid C_{k})\,.} Thus, the joint model can be expressed as p ( C k ∣ x 1 , … , x n ) ∝ p ( C k , x 1 , … , x n ) = p ( C k ) p ( x 1 ∣ C k ) p ( x 2 ∣ C k ) p ( x 3 ∣ C k ) ⋯ = p ( C k ) ∏ i = 1 n p ( x i ∣ C k ) , {\displaystyle {\begin{aligned}p(C_{k}\mid x_{1},\ldots ,x_{n})\varpropto \ &p(C_{k},x_{1},\ldots ,x_{n})\\&=p(C_{k})\ p(x_{1}\mid C_{k})\ p(x_{2}\mid C_{k})\ p(x_{3}\mid C_{k})\ \cdots \\&=p(C_{k})\prod _{i=1}^{n}p(x_{i}\mid C_{k})\,,\end{aligned}}} where ∝ {\displaystyle \varpropto } denotes proportionality since the denominator p ( x ) {\displaystyle p(\mathbf {x} )} is omitted. This means that under the above independence assumptions, the conditional distribution over the class variable C {\displaystyle C} is: p ( C k ∣ x 1 , … , x n ) = 1 Z p ( C k ) ∏ i = 1 n p ( x i ∣ C k ) {\displaystyle p(C_{k}\mid x_{1},\ldots ,x_{n})={\frac {1}{Z}}\ p(C_{k})\prod _{i=1}^{n}p(x_{i}\mid C_{k})} where the evidence Z = p ( x ) = ∑ k p ( C k ) p ( x ∣ C k ) {\displaystyle Z=p(\mathbf {x} )=\sum _{k}p(C_{k})\ p(\mathbf {x} \mid C_{k})} is a scaling factor dependent only on x 1 , … , x n {\displaystyle x_{1},\ldots ,x_{n}} , that is, a constant if the values of the feature variables are known. Often, it is only necessary to discriminate between classes. In that case, the scaling factor is irrelevant, and it is sufficient to calculate the log-probability up to a factor: ln ⁡ p ( C k ∣ x 1 , … , x n ) = ln ⁡ p ( C k ) + ∑ i = 1 n ln ⁡ p ( x i ∣ C k ) − ln ⁡ Z ⏟ irrelevant {\displaystyle \ln p(C_{k}\mid x_{1},\ldots ,x_{n})=\ln p(C_{k})+\sum _{i=1}^{n}\ln p(x_{i}\mid C_{k})\underbrace {-\ln Z} _{\text{irrelevant}}} The scaling factor is irrelevant, since discrimination subtracts it away: ln ⁡ p ( C k ∣ x 1 , … , x n ) p ( C l ∣ x 1 , … , x n ) = ( ln ⁡ p ( C k ) + ∑ i = 1 n ln ⁡ p ( x i ∣ C k ) ) − ( ln ⁡ p ( C l ) + ∑ i = 1 n ln ⁡ p ( x i ∣ C l ) ) {\displaystyle \ln {\frac {p(C_{k}\mid x_{1},\ldots ,x_{n})}{p(C_{l}\mid x_{1},\ldots ,x_{n})}}=\left(\ln p(C_{k})+\sum _{i=1}^{n}\ln p(x_{i}\mid C_{k})\right)-\left(\ln p(C_{l})+\sum _{i=1}^{n}\ln p(x_{i}\mid C_{l})\right)} There are two benefits of using log-probability. One is that it allows an interpretation in information theory, where log-probabilities are units of information in nats. Another is that it avoids arithmetic underflow. === Constructing a classifier from the probability model === The discussion so far has derived the independent feature model, that is, the naive Bayes probability model. The naive Bayes classifier combines this model with a decision rule. One common rule is to pick the hypothesis that is most probable so as to minimize the probability of misclassification; this is known as the maximum a posteriori or MAP decision rule. The corresponding classifier, a Bayes classifier, is the function that assigns a class label y ^ = C k {\displaystyle {\hat {y}}=C_{k}} for some k as follows: y ^ = argmax k ∈ { 1 , … , K } p ( C k ) ∏ i = 1 n p ( x i ∣ C k ) . {\displaystyle {\hat {y}}={\underset {k\in \{1,\ldots ,K\}}{\operatorname {argmax} }}\ p(C_{k})\displays

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  • Promoter based genetic algorithm

    Promoter based genetic algorithm

    The promoter based genetic algorithm (PBGA) is a genetic algorithm for neuroevolution developed by F. Bellas and R.J. Duro in the Integrated Group for Engineering Research (GII) at the University of Coruña, in Spain. It evolves variable size feedforward artificial neural networks (ANN) that are encoded into sequences of genes for constructing a basic ANN unit. Each of these blocks is preceded by a gene promoter acting as an on/off switch that determines if that particular unit will be expressed or not. == PBGA basics == The basic unit in the PBGA is a neuron with all of its inbound connections as represented in the following figure: The genotype of a basic unit is a set of real valued weights followed by the parameters of the neuron and proceeded by an integer valued field that determines the promoter gene value and, consequently, the expression of the unit. By concatenating units of this type we can construct the whole network. With this encoding it is imposed that the information that is not expressed is still carried by the genotype in evolution but it is shielded from direct selective pressure, maintaining this way the diversity in the population, which has been a design premise for this algorithm. Therefore, a clear difference is established between the search space and the solution space, permitting information learned and encoded into the genotypic representation to be preserved by disabling promoter genes. == Results == The PBGA was originally presented within the field of autonomous robotics, in particular in the real time learning of environment models of the robot. It has been used inside the Multilevel Darwinist Brain (MDB) cognitive mechanism developed in the GII for real robots on-line learning. In another paper it is shown how the application of the PBGA together with an external memory that stores the successful obtained world models, is an optimal strategy for adaptation in dynamic environments. Recently, the PBGA has provided results that outperform other neuroevolutionary algorithms in non-stationary problems, where the fitness function varies in time.

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  • Constructing skill trees

    Constructing skill trees

    Constructing skill trees (CST) is a hierarchical reinforcement learning algorithm which can build skill trees from a set of sample solution trajectories obtained from demonstration. CST uses an incremental MAP (maximum a posteriori) change point detection algorithm to segment each demonstration trajectory into skills and integrate the results into a skill tree. CST was introduced by George Konidaris, Scott Kuindersma, Andrew Barto and Roderic Grupen in 2010. == Algorithm == CST consists of mainly three parts;change point detection, alignment and merging. The main focus of CST is online change-point detection. The change-point detection algorithm is used to segment data into skills and uses the sum of discounted reward R t {\displaystyle R_{t}} as the target regression variable. Each skill is assigned an appropriate abstraction. A particle filter is used to control the computational complexity of CST. The change point detection algorithm is implemented as follows. The data for times t ∈ T {\displaystyle t\in T} and models Q with prior p ( q ∈ Q ) {\displaystyle p(q\in Q)} are given. The algorithm is assumed to be able to fit a segment from time j + 1 {\displaystyle j+1} to t using model q with the fit probability P ( j , t , q ) {\displaystyle P(j,t,q)_{}^{}} . A linear regression model with Gaussian noise is used to compute P ( j , t , q ) {\displaystyle P(j,t,q)} . The Gaussian noise prior has mean zero, and variance which follows I n v e r s e G a m m a ( v 2 , u 2 ) {\displaystyle \mathrm {InverseGamma} \left({\frac {v}{2}},{\frac {u}{2}}\right)} . The prior for each weight follows N o r m a l ( 0 , σ 2 δ ) {\displaystyle \mathrm {Normal} (0,\sigma ^{2}\delta )} . The fit probability P ( j , t , q ) {\displaystyle P(j,t,q)} is computed by the following equation. P ( j , t , q ) = π − n 2 δ m | ( A + D ) − 1 | 1 2 u v 2 ( y + u ) u + v 2 Γ ( n + v 2 ) Γ ( v 2 ) {\displaystyle P(j,t,q)={\frac {\pi ^{-{\frac {n}{2}}}}{\delta ^{m}}}\left|(A+D)^{-1}\right|^{\frac {1}{2}}{\frac {u^{\frac {v}{2}}}{(y+u)^{\frac {u+v}{2}}}}{\frac {\Gamma ({\frac {n+v}{2}})}{\Gamma ({\frac {v}{2}})}}} Then, CST compute the probability of the changepoint at time j with model q, P t ( j , q ) {\displaystyle P_{t}(j,q)} and P j MAP {\displaystyle P_{j}^{\text{MAP}}} using a Viterbi algorithm. P t ( j , q ) = ( 1 − G ( t − j − 1 ) ) P ( j , t , q ) p ( q ) P j MAP {\displaystyle P_{t}(j,q)=(1-G(t-j-1))P(j,t,q)p(q)P_{j}^{\text{MAP}}} P j MAP = max i , q P j ( i , q ) g ( j − i ) 1 − G ( j − i − 1 ) , ∀ j < t {\displaystyle P_{j}^{\text{MAP}}=\max _{i,q}{\frac {P_{j}(i,q)g(j-i)}{1-G(j-i-1)}},\forall j Read more →

  • Elements of AI

    Elements of AI

    Elements of AI is a massive open online course (MOOC) teaching the basics of artificial intelligence. The course, originally launched in 2018, is designed and organized by the University of Helsinki and learning technology company MinnaLearn. The course includes modules on machine learning, neural networks, the philosophy of artificial intelligence, and using artificial intelligence to solve problems. It consists of two parts: Introduction to AI and its sequel, Building AI, that was released in late 2020. In November 2019, the course was named one of four winners of MIT’s Inclusive Innovation Challenge. University of Helsinki's computer science department is known as the alma mater of Linus Torvalds, a Finnish-American software engineer who is the creator of the Linux kernel, which is the kernel for Linux operating systems. == EU’s AI pledge == The government of Finland has pledged to offer the course for all EU citizens by the end of 2021, as the course is made available in all the official EU languages. The initiative was launched as part of Finland's Presidency of the Council of the European Union in 2019, with the European Commission providing translations of the course materials. In 2017, Finland launched an AI strategy to stay competitive in the field of AI amid growing competition between China and the United States. With the support of private companies and the government, Finland's now-realized goal was to get 1 percent of its citizens to participate in Elements of AI. Other governments have also given their support to the course. For instance, Germany's Federal Minister for Economic Affairs and Energy Peter Altmeier has encouraged citizens to take part in the course to help Germany gain a competitive advantage in AI. Sweden's Minister for Energy and Minister for Digital Development Anders Ygeman has said that Sweden aims to teach 1 percent of its population the basics of AI like Finland has. == Participants == Elements of AI had enrolled more than 1 million students from more than 110 countries by May 2023. A quarter of the course's participants are aged 45 and over, and some 40 percent are women. Among Nordic participants, the share of women is nearly 60 percent. In September 2022, the course was available in Finnish, Swedish, Estonian, English, German, Latvian, Norwegian, French, Belgian, Czech, Greek, Slovakian, Slovenian, Latvian, Lithuanian, Portuguese, Spanish, Irish, Icelandic, Maltese, Croatian, Romanian, Italian, Dutch, Polish, and Danish.

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  • Radial basis function kernel

    Radial basis function kernel

    In machine learning, the radial basis function kernel, or RBF kernel, is a popular kernel function used in various kernelized learning algorithms. In particular, it is commonly used in support vector machine classification. The RBF kernel on two samples x , x ′ ∈ R k {\displaystyle \mathbf {x} ,\mathbf {x'} \in \mathbb {R} ^{k}} , represented as feature vectors in some input space, is defined as K ( x , x ′ ) = exp ⁡ ( − ‖ x − x ′ ‖ 2 2 σ 2 ) {\displaystyle K(\mathbf {x} ,\mathbf {x'} )=\exp \left(-{\frac {\|\mathbf {x} -\mathbf {x'} \|^{2}}{2\sigma ^{2}}}\right)} ‖ x − x ′ ‖ 2 {\displaystyle \textstyle \|\mathbf {x} -\mathbf {x'} \|^{2}} may be recognized as the squared Euclidean distance between the two feature vectors. σ {\displaystyle \sigma } is a free parameter. An equivalent definition involves a parameter γ = 1 2 σ 2 {\displaystyle \textstyle \gamma ={\tfrac {1}{2\sigma ^{2}}}} : K ( x , x ′ ) = exp ⁡ ( − γ ‖ x − x ′ ‖ 2 ) {\displaystyle K(\mathbf {x} ,\mathbf {x'} )=\exp(-\gamma \|\mathbf {x} -\mathbf {x'} \|^{2})} Since the value of the RBF kernel decreases with distance and ranges between zero (in the infinite-distance limit) and one (when x = x'), it has a ready interpretation as a similarity measure. The feature space of the kernel has an infinite number of dimensions; for σ = 1 {\displaystyle \sigma =1} , its expansion using the multinomial theorem is: exp ⁡ ( − 1 2 ‖ x − x ′ ‖ 2 ) = exp ⁡ ( 2 2 x ⊤ x ′ − 1 2 ‖ x ‖ 2 − 1 2 ‖ x ′ ‖ 2 ) = exp ⁡ ( x ⊤ x ′ ) exp ⁡ ( − 1 2 ‖ x ‖ 2 ) exp ⁡ ( − 1 2 ‖ x ′ ‖ 2 ) = ∑ j = 0 ∞ ( x ⊤ x ′ ) j j ! exp ⁡ ( − 1 2 ‖ x ‖ 2 ) exp ⁡ ( − 1 2 ‖ x ′ ‖ 2 ) = ∑ j = 0 ∞ ∑ n 1 + n 2 + ⋯ + n k = j exp ⁡ ( − 1 2 ‖ x ‖ 2 ) x 1 n 1 ⋯ x k n k n 1 ! ⋯ n k ! exp ⁡ ( − 1 2 ‖ x ′ ‖ 2 ) x ′ 1 n 1 ⋯ x ′ k n k n 1 ! ⋯ n k ! = ⟨ φ ( x ) , φ ( x ′ ) ⟩ {\displaystyle {\begin{alignedat}{2}\exp \left(-{\frac {1}{2}}\|\mathbf {x} -\mathbf {x'} \|^{2}\right)&=\exp \left({\frac {2}{2}}\mathbf {x} ^{\top }\mathbf {x'} -{\frac {1}{2}}\|\mathbf {x} \|^{2}-{\frac {1}{2}}\|\mathbf {x'} \|^{2}\right)\\[5pt]&=\exp \left(\mathbf {x} ^{\top }\mathbf {x'} \right)\exp \left(-{\frac {1}{2}}\|\mathbf {x} \|^{2}\right)\exp \left(-{\frac {1}{2}}\|\mathbf {x'} \|^{2}\right)\\[5pt]&=\sum _{j=0}^{\infty }{\frac {(\mathbf {x} ^{\top }\mathbf {x'} )^{j}}{j!}}\exp \left(-{\frac {1}{2}}\|\mathbf {x} \|^{2}\right)\exp \left(-{\frac {1}{2}}\|\mathbf {x'} \|^{2}\right)\\[5pt]&=\sum _{j=0}^{\infty }\quad \sum _{n_{1}+n_{2}+\dots +n_{k}=j}\exp \left(-{\frac {1}{2}}\|\mathbf {x} \|^{2}\right){\frac {x_{1}^{n_{1}}\cdots x_{k}^{n_{k}}}{\sqrt {n_{1}!\cdots n_{k}!}}}\exp \left(-{\frac {1}{2}}\|\mathbf {x'} \|^{2}\right){\frac {{x'}_{1}^{n_{1}}\cdots {x'}_{k}^{n_{k}}}{\sqrt {n_{1}!\cdots n_{k}!}}}\\[5pt]&=\langle \varphi (\mathbf {x} ),\varphi (\mathbf {x'} )\rangle \end{alignedat}}} φ ( x ) = exp ⁡ ( − 1 2 ‖ x ‖ 2 ) ( a ℓ 0 ( 0 ) , a 1 ( 1 ) , … , a ℓ 1 ( 1 ) , … , a 1 ( j ) , … , a ℓ j ( j ) , … ) {\displaystyle \varphi (\mathbf {x} )=\exp \left(-{\frac {1}{2}}\|\mathbf {x} \|^{2}\right)\left(a_{\ell _{0}}^{(0)},a_{1}^{(1)},\dots ,a_{\ell _{1}}^{(1)},\dots ,a_{1}^{(j)},\dots ,a_{\ell _{j}}^{(j)},\dots \right)} where ℓ j = ( k + j − 1 j ) {\displaystyle \ell _{j}={\tbinom {k+j-1}{j}}} , a ℓ ( j ) = x 1 n 1 ⋯ x k n k n 1 ! ⋯ n k ! | n 1 + n 2 + ⋯ + n k = j ∧ 1 ≤ ℓ ≤ ℓ j {\displaystyle a_{\ell }^{(j)}={\frac {x_{1}^{n_{1}}\cdots x_{k}^{n_{k}}}{\sqrt {n_{1}!\cdots n_{k}!}}}\quad |\quad n_{1}+n_{2}+\dots +n_{k}=j\wedge 1\leq \ell \leq \ell _{j}} == Approximations == Because support vector machines and other models employing the kernel trick do not scale well to large numbers of training samples or large numbers of features in the input space, several approximations to the RBF kernel (and similar kernels) have been introduced. Typically, these take the form of a function z that maps a single vector to a vector of higher dimensionality, approximating the kernel: ⟨ z ( x ) , z ( x ′ ) ⟩ ≈ ⟨ φ ( x ) , φ ( x ′ ) ⟩ = K ( x , x ′ ) {\displaystyle \langle z(\mathbf {x} ),z(\mathbf {x'} )\rangle \approx \langle \varphi (\mathbf {x} ),\varphi (\mathbf {x'} )\rangle =K(\mathbf {x} ,\mathbf {x'} )} where φ {\displaystyle \textstyle \varphi } is the implicit mapping embedded in the RBF kernel. === Fourier random features === One way to construct such a z is to randomly sample from the Fourier transformation of the kernel φ ( x ) = 1 D [ cos ⁡ ⟨ w 1 , x ⟩ , sin ⁡ ⟨ w 1 , x ⟩ , … , cos ⁡ ⟨ w D , x ⟩ , sin ⁡ ⟨ w D , x ⟩ ] T {\displaystyle \varphi (x)={\frac {1}{\sqrt {D}}}[\cos \langle w_{1},x\rangle ,\sin \langle w_{1},x\rangle ,\ldots ,\cos \langle w_{D},x\rangle ,\sin \langle w_{D},x\rangle ]^{T}} where w 1 , . . . , w D {\displaystyle w_{1},...,w_{D}} are independent samples from the normal distribution N ( 0 , σ − 2 I ) {\displaystyle N(0,\sigma ^{-2}I)} . Theorem: E ⁡ [ ⟨ φ ( x ) , φ ( y ) ⟩ ] = e ‖ x − y ‖ 2 / ( 2 σ 2 ) . {\displaystyle \operatorname {E} [\langle \varphi (x),\varphi (y)\rangle ]=e^{\|x-y\|^{2}/(2\sigma ^{2})}.} Proof: It suffices to prove the case of D = 1 {\displaystyle D=1} . Use the trigonometric identity cos ⁡ ( a − b ) = cos ⁡ ( a ) cos ⁡ ( b ) + sin ⁡ ( a ) sin ⁡ ( b ) {\displaystyle \cos(a-b)=\cos(a)\cos(b)+\sin(a)\sin(b)} , the spherical symmetry of Gaussian distribution, then evaluate the integral ∫ − ∞ ∞ cos ⁡ ( k x ) e − x 2 / 2 2 π d x = e − k 2 / 2 . {\displaystyle \int _{-\infty }^{\infty }{\frac {\cos(kx)e^{-x^{2}/2}}{\sqrt {2\pi }}}dx=e^{-k^{2}/2}.} Theorem: Var ⁡ [ ⟨ φ ( x ) , φ ( y ) ⟩ ] = O ( D − 1 ) {\displaystyle \operatorname {Var} [\langle \varphi (x),\varphi (y)\rangle ]=O(D^{-1})} . (Appendix A.2). === Nyström method === Another approach uses the Nyström method to approximate the eigendecomposition of the Gram matrix K, using only a random sample of the training set.

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  • FERET database

    FERET database

    The Facial Recognition Technology (FERET) database is a dataset used for facial recognition system evaluation as part of the Face Recognition Technology (FERET) program. It was first established in 1993 under a collaborative effort between Harry Wechsler at George Mason University and Jonathon Phillips at the Army Research Laboratory in Adelphi, Maryland. The FERET database serves as a standard database of facial images for researchers to use to develop various algorithms and report results. The use of a common database also allowed one to compare the effectiveness of different approaches in methodology and gauge their strengths and weaknesses. The facial images for the database were collected between December 1993 and August 1996, accumulating a total of 14,126 images pertaining to 1,199 individuals along with 365 duplicate sets of images that were taken on a different day. In 2003, the Defense Advanced Research Projects Agency (DARPA) released a high-resolution, 24-bit color version of these images. The dataset tested includes 2,413 still facial images, representing 856 individuals. The FERET database has been used by more than 460 research groups and is managed by the National Institute of Standards and Technology (NIST).

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  • Neural Networks (journal)

    Neural Networks (journal)

    Neural Networks is a monthly peer-reviewed scientific journal and an official journal of the International Neural Network Society, European Neural Network Society, and Japanese Neural Network Society. == History == The journal was established in 1988 and is published by Elsevier. It covers all aspects of research on artificial neural networks. The founding editor-in-chief was Stephen Grossberg (Boston University). The current editors-in-chief are DeLiang Wang (Ohio State University) and Taro Toyoizumi (RIKEN Center for Brain Science). == Abstracting and indexing == The journal is abstracted and indexed in Scopus and the Science Citation Index Expanded. According to the Journal Citation Reports, the journal has a 2022 impact factor of 7.8.

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  • COVID-19 apps

    COVID-19 apps

    COVID-19 apps include mobile-software applications for digital contact-tracing—i.e. the process of identifying persons ("contacts") who may have been in contact with an infected individual—deployed during the COVID-19 pandemic. Numerous tracing applications have been developed or proposed, with official government support in some territories and jurisdictions. Several frameworks for building contact-tracing apps have been developed. Privacy concerns have been raised, especially about systems that are based on tracking the geographical location of app users. Less overtly intrusive alternatives include the co-option of Bluetooth signals to log a user's proximity to other cellphones. (Bluetooth technology has form in tracking cell-phones' locations.)) On 10 April 2020, Google and Apple jointly announced that they would integrate functionality to support such Bluetooth-based apps directly into their Android and iOS operating systems. India's COVID-19 tracking app Aarogya Setu became the world's fastest growing application—beating Pokémon Go—with 50 million users in the first 13 days of its release. == Rationale == Contact tracing is an important tool in infectious disease control, but as the number of cases rises time constraints make it more challenging to effectively control transmission. Digital contact tracing, especially if widely deployed, may be more effective than traditional methods of contact tracing. In a March 2020 model by the University of Oxford Big Data Institute's Christophe Fraser's team, a coronavirus outbreak in a city of one million people is halted if 80% of all smartphone users take part in a tracking system; in the model, the elderly are still expected to self-isolate en masse, but individuals who are neither symptomatic nor elderly are exempt from isolation unless they receive an alert that they are at risk of carrying the disease. Some proponents advocate for legislation exempting certain COVID-19 apps from general privacy restrictions. == Issues == === Uptake === Ross Anderson, professor of security engineering at Cambridge University, listed a number of potential practical problems with app-based systems, including false positives and the potential lack of effectiveness if takeup of the app is limited to only a small fraction of the population. In Singapore, only one person in three had downloaded the TraceTogether app by the end of June 2020, despite legal requirements for most workers; the app was also underused, as it required users to keep it open at all times on iOS. A team at the University of Oxford simulated the effect of a contact tracing app on a city of 1 million. They estimated that if the app was used in conjunction with the shielding of over-70s, then 56% of the population would have to be using the app for it to suppress the virus. This would be equivalent to 80% of smartphone users in the United Kingdom. They found that the app could still slow the spread of the virus if fewer people downloaded it, with one infection being prevented for every one or two users. In August 2020, the American Civil Liberties Union (ACLU) argued that there were disparities in smartphone use between demographics and minority groups, and that "even the most comprehensive, all-seeing contact tracing system is of little use without social and medical systems in place to help those who may have the virus — including access to medical care, testing, and support for those who are quarantined." === App store restrictions === Addressing concerns about the spread of misleading or harmful apps, Apple, Google and Amazon set limits on which types of organizations could add coronavirus-related apps to its App Store, limiting them to only "official" or otherwise reputable organizations. === Ethical principles of mass surveillance using COVID-19 contact tracing apps === The advent of COVID-19 contact tracing apps has led to concerns around privacy, the rights of app users, and governmental authority. The European Convention on Human Rights, the International Covenant on Civil and Political Rights (ICCPR) and the United Nations and the Siracusa Principles have outlined 4 principles to consider when looking at the ethical principles of mass surveillance with COVID-19 contact tracing apps. These are necessity, proportionality, scientific validity, and time boundedness. Necessity is defined as the idea that governments should only interfere with a person's rights when deemed essential for public health interests. The potential risks associated with infringements of personal privacy must be outweighed by the possibility of reducing significant harm to others. Potential benefits of contact-tracing apps that may be considered include allowing for blanket population-level quarantine measures to be lifted sooner and the minimization of people under quarantine. Hence, some contend that contact-tracing apps are justified as they may be less intrusive than blanket quarantine measures. Furthermore, the delay of an effective contact-tracing app with significant health and economic benefits may be considered unethical. Proportionality refers to the concept that a contact tracing app's potential negative impact on a person's rights should be justifiable by the severity of the health risks that are being addressed. Apps must use the most privacy-preserving options available to achieve their goals, and the selected option should not only be a logical option for achieving the goal but also an effective one. Scientific validity evaluates whether an app is effective, timely and accurate. Traditional manual contact-tracing procedures are not efficient enough for the COVID-19 pandemic, and do not consider asymptomatic transmission. Contact-tracing apps, on the other hand, can be effective COVID-19 contact-tracing tools that reduce R value to less than 1, leading to sustained epidemic suppression. However, for apps to be effective, there needs to be a minimum 56-60% uptake in the population. Apps should be continually modified to reflect current knowledge on the diseases being monitored. Some argue that contact-tracing apps should be considered societal experimental trials where results and adverse effects are evaluated according to the stringent guidelines of social experiments. Analyses should be conducted by independent research bodies and published for wide dissemination. Despite the current urgency of our pandemic situation, we should still adhere to the standard rigors of scientific evaluation. Time boundedness describe the need for establishing legal and technical sunset clauses so that they are only allowed to operate as long as necessary to address the pandemic situation. Apps should be withdrawn as soon as possible after the end of the pandemic. If the end of the pandemic cannot be predicted, the use of apps should be regularly reviewed and decisions about continued use should be made at each review. Collected data should only be retained by public health authorities for research purposes with clear stipulations on how long the data will be held for and who will be responsible for security, oversight, and ownership. === Privacy, discrimination and marginalisation concerns === The American Civil Liberties Union (ACLU) has published a set of principles for technology-assisted contact tracing and Amnesty International and over 100 other organizations issued a statement calling for limits on this kind of surveillance. The organisations declared eight conditions on governmental projects: surveillance would have to be "lawful, necessary and proportionate"; extensions of monitoring and surveillance would have to have sunset clauses; the use of data would have to be limited to COVID-19 purposes; data security and anonymity would have to be protected and shown to be protected based on evidence; digital surveillance would have to address the risk of exacerbating discrimination and marginalisation; any sharing of data with third parties would have to be defined in law; there would have to be safeguards against abuse and the rights of citizens to respond to abuses; "meaningful participation" by all "relevant stakeholders" would be required, including that of public health experts and marginalised groups. The German Chaos Computer Club (CCC) and Reporters Without Borders also issued checklists. The Exposure Notification service intends to address the problem of persistent surveillance by removing the tracing mechanism from their device operating systems once it is no longer needed. On 20 April 2020, it was reported that over 300 academics had signed a statement favouring decentralised proximity tracing applications over centralised models, given the difficulty in precluding centralised options being used "to enable unwarranted discrimination and surveillance." In a centralised model, a central database records the ID codes of meetings between users. In a decentralised model, this information is recorded on individual phones, with the role of the central

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  • Abess

    Abess

    abess (Adaptive Best Subset Selection, also ABESS) is a machine learning method designed to address the problem of best subset selection. It aims to determine which features or variables are crucial for optimal model performance when provided with a dataset and a prediction task. abess was introduced by Zhu in 2020 and it dynamically selects the appropriate model size adaptively, eliminating the need for selecting regularization parameters. abess is applicable in various statistical and machine learning tasks, including linear regression, the Single-index model, and other common predictive models. abess can also be applied in biostatistics. == Basic Form == The basic form of abess is employed to address the optimal subset selection problem in general linear regression. abess is an l 0 {\displaystyle l_{0}} method, it is characterized by its polynomial time complexity and the property of providing both unbiased and consistent estimates. In the context of linear regression, assuming we have knowledge of n {\displaystyle n} independent samples ( x i , y i ) , i = 1 , … , n {\displaystyle (x_{i},y_{i}),i=1,\ldots ,n} , where x i ∈ R p × 1 {\displaystyle x_{i}\in \mathbb {R} ^{p\times 1}} and y i ∈ R {\displaystyle y_{i}\in \mathbb {R} } , we define X = ( x 1 , … , x n ) ⊤ {\displaystyle X=(x_{1},\ldots ,x_{n})^{\top }} and y = ( y 1 , … , y n ) ⊤ {\displaystyle y=(y_{1},\ldots ,y_{n})^{\top }} . The following equation represents the general linear regression model: y = X β + ε . {\displaystyle y=X\beta +\varepsilon .} To obtain appropriate parameters β {\displaystyle \beta } , one can consider the loss function for linear regression: L n LR ( β ; X , y ) = 1 2 n ‖ y − X β ‖ 2 2 . {\displaystyle {\mathcal {L}}_{n}^{\text{LR}}(\beta ;X,y)={\frac {1}{2n}}\|y-X\beta \|_{2}^{2}.} In abess, the initial focus is on optimizing the loss function under the l 0 {\displaystyle l_{0}} constraint. That is, we consider the following problem: min β ∈ R p × 1 L n LR ( β ; X , y ) , subject to ‖ β ‖ 0 ≤ s , {\displaystyle \min _{\beta \in \mathbb {R} ^{p\times 1}}{\mathcal {L}}_{n}^{\text{LR}}(\beta ;X,y),{\text{ subject to }}\|\beta \|_{0}\leq s,} where s {\displaystyle s} represents the desired size of the support set, and ‖ β ‖ 0 = ∑ i = 1 p I ( β i ≠ 0 ) {\displaystyle \|\beta \|_{0}=\sum _{i=1}^{p}{\mathcal {I}}_{(\beta _{i}\neq 0)}} is the l 0 {\displaystyle l_{0}} norm of the vector. To address the optimization problem described above, abess iteratively exchanges an equal number of variables between the active set and the inactive set. In each iteration, the concept of sacrifice is introduced as follows: For j in the active set ( j ∈ A ^ {\displaystyle j\in {\hat {\mathcal {A}}}} ): ξ j = L n LR ( β ^ A ∖ { j } ) − L n LR ( β ^ A ) = X j ⊤ X j 2 n ( β ^ j ) 2 {\displaystyle \xi _{j}={\mathcal {L}}_{n}^{\text{LR}}\left({\hat {\boldsymbol {\beta }}}^{{\mathcal {A}}\backslash \{j\}}\right)-{\mathcal {L}}_{n}^{\text{LR}}\left({\hat {\boldsymbol {\beta }}}^{\mathcal {A}}\right)={\frac {{\boldsymbol {X}}_{j}^{\top }{\boldsymbol {X}}_{j}}{2n}}\left({\hat {\beta }}_{j}\right)^{2}} For j in the inactive set ( j ∉ A ^ {\displaystyle j\notin {\hat {\mathcal {A}}}} ): ξ j = L n LR ( β ^ A ) − L n LR ( β ^ A + t ^ { j } ) = X j ⊤ X j 2 n ( d ^ j X j ⊤ X j / n ) 2 {\displaystyle \xi _{j}={\mathcal {L}}_{n}^{\text{LR}}\left({\hat {\boldsymbol {\beta }}}^{\mathcal {A}}\right)-{\mathcal {L}}_{n}^{\text{LR}}\left({\hat {\boldsymbol {\beta }}}^{\mathcal {A}}+{\hat {\boldsymbol {t}}}^{\{j\}}\right)={\frac {{\boldsymbol {X}}_{j}^{\top }{\boldsymbol {X}}_{j}}{2n}}\left({\frac {{\hat {\mathrm {d} }}_{j}}{{\boldsymbol {X}}_{j}^{\top }{\boldsymbol {X}}_{j}/n}}\right)^{2}} Here are the key elements in the above equations: β ^ A {\displaystyle {\hat {\beta }}^{\mathcal {A}}} : This represents the estimate of β {\displaystyle \beta } obtained in the previous iteration. A ^ {\displaystyle {\hat {\mathcal {A}}}} : It denotes the estimated active set from the previous iteration. β ^ A ∖ { j } {\displaystyle {\hat {\boldsymbol {\beta }}}^{{\mathcal {A}}\backslash \{j\}}} : This is a vector where the j-th element is set to 0, while the other elements are the same as β ^ A {\displaystyle {\hat {\beta }}^{\mathcal {A}}} . t ^ { j } = arg ⁡ min t L n LR ( β ^ A + t { j } ) {\displaystyle {\hat {\boldsymbol {t}}}^{\{j\}}=\arg \min _{t}{\mathcal {L}}_{n}^{\text{LR}}\left({\hat {\boldsymbol {\beta }}}^{\mathcal {A}}+{\boldsymbol {t}}^{\{j\}}\right)} : Here, t { j } {\displaystyle t^{\{j\}}} represents a vector where all elements are 0 except the j-th element. d ^ j = X j ⊤ ( y − X β ^ ) / n {\displaystyle {\hat {d}}_{j}={\boldsymbol {X}}_{j}^{\top }({\boldsymbol {y}}-{\boldsymbol {X}}{\hat {\boldsymbol {\beta }}})/n} : This is calculated based on the equation mentioned. The iterative process involves exchanging variables, with the aim of minimizing the sacrifices in the active set while maximizing the sacrifices in the inactive set during each iteration. This approach allows abess to efficiently search for the optimal feature subset. In abess, select an appropriate s max {\displaystyle s_{\max }} and optimize the above problem for active sets size s = 1 , … , s max {\displaystyle s=1,\ldots ,s_{\max }} using the information criterion GIC = n log ⁡ L n LR + s log ⁡ p log ⁡ log ⁡ n , {\displaystyle {\text{GIC}}=n\log {\mathcal {L}}_{n}^{\text{LR}}+s\log p\log \log n,} to adaptively choose the appropriate active set size s {\displaystyle s} and obtain its corresponding abess estimator. == Generalizations == The splicing algorithm in abess can be employed for subset selection in other models. === Distribution-Free Location-Scale Regression === In 2023, Siegfried extends abess to the case of Distribution-Free and Location-Scale. Specifically, it considers the optimization problem max ϑ ∈ R P , β ∈ R J , γ ∈ R J ∑ i = 1 N ℓ i ( ϑ , x i ⊤ β , exp ⁡ ( x i ⊤ γ ) − 1 ) , {\displaystyle \max _{{\boldsymbol {\vartheta }}\in \mathbb {R} ^{P},{\boldsymbol {\beta }}\in \mathbb {R} ^{J},{\boldsymbol {\gamma }}\in \mathbb {R} ^{J}}\sum _{i=1}^{N}\ell _{i}\left({\boldsymbol {\vartheta }},{\boldsymbol {x}}_{i}^{\top }{\boldsymbol {\beta }},{\sqrt {\exp \left({\boldsymbol {x}}_{i}^{\top }{\boldsymbol {\gamma }}\right)}}^{-1}\right),} subject to ‖ ( β ⊤ , γ ⊤ ) ⊤ ‖ 0 ≤ s , {\displaystyle \left\|\left({\boldsymbol {\beta }}^{\top },{\boldsymbol {\gamma }}^{\top }\right)^{\top }\right\|_{0}\leq s,} where ℓ i {\displaystyle \ell _{i}} is a loss function, ϑ {\displaystyle {\boldsymbol {\vartheta }}} is a parameter vector, β {\displaystyle {\boldsymbol {\beta }}} and γ {\displaystyle {\boldsymbol {\gamma }}} are vectors, and x i {\displaystyle {\boldsymbol {x}}_{i}} is a data vector. This approach, demonstrated across various applications, enables parsimonious regression modeling for arbitrary outcomes while maintaining interpretability through innovative subset selection procedures. === Groups Selection === In 2023, Zhang applied the splicing algorithm to group selection, optimizing the following model: min β ∈ R p L n LR ( β ; X , y ) subject to ∑ j = 1 J I ( ‖ β G j ‖ 2 ≠ 0 ) ≤ s {\displaystyle \min _{{\boldsymbol {\beta }}\in \mathbb {R} ^{p}}{\mathcal {L}}_{n}^{\text{LR}}(\beta ;X,y){\text{ subject to }}\sum _{j=1}^{J}I\left(\|{\boldsymbol {\beta }}_{G_{j}}\|_{2}\neq 0\right)\leq s} Here are the symbols involved: J {\displaystyle J} : Total number of feature groups, representing the existence of J {\displaystyle J} non-overlapping feature groups in the dataset. G j {\displaystyle G_{j}} : Index set for the j {\displaystyle j} -th feature group, where j {\displaystyle j} ranges from 1 to J {\displaystyle J} , representing the feature grouping structure in the data. s {\displaystyle s} : Model size, a positive integer determined from the data, limiting the number of selected feature groups. === Regression with Corrupted Data === Zhang applied the splicing algorithm to handle corrupted data. Corrupted data refers to information that has been disrupted or contains errors during the data collection or recording process. This interference may include sensor inaccuracies, recording errors, communication issues, or other external disturbances, leading to inaccurate or distorted observations within the dataset. === Single Index Models === In 2023, Tang applied the splicing algorithm to optimal subset selection in the Single-index model. The form of the Single Index Model (SIM) is given by y i = g ( b ⊤ x i , e i ) , i = 1 , … , n , {\displaystyle y_{i}=g({\boldsymbol {b}}^{\top }{\boldsymbol {x}}_{i},e_{i}),\quad i=1,\ldots ,n,} where b {\displaystyle {\boldsymbol {b}}} is the parameter vector, e i {\displaystyle e_{i}} is the error term. The corresponding loss function is defined as l n ( β ) = ∑ i = 1 n ( r i n − 1 2 − x i ⊤ β ) 2 , {\displaystyle l_{n}({\boldsymbol {\beta }})=\sum _{i=1}^{n}\left({\frac {r_{i}}{n}}-{\frac {1}{2}}-{\boldsymbol {x}}_{i}^{\top }{\boldsymbol {\beta }}\right)^{2},} where r {\disp

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  • Bioz

    Bioz

    Bioz is a search engine for life science experimentation. == History == Bioz was founded by Karin Lachmi and Daniel Levitt. Lachmi is a scientist who completed her postdoc in molecular and cellular biology at the Stanford University School of Medicine. During her lab work she found little available data regarding preferable lab tools, reagents and related products for experimentation. There are 50,000 vendors selling 300 million scientific products. She decided to start the company in order to provide researchers with adequate information for that purpose. Co-founder Daniel Levitt is an entrepreneur who sold his company WebAppoint to Microsoft in the year 2000. He also co-founded the company StemRad. At Bioz, Lachmi serves as the Chief Scientific Officer and Levitt serves as the chief executive officer. Bioz claims to have over a million researcher-users from 196 countries. Among the investors are Esther Dyson and the Stanford-StartX Fund. The company's advisory board includes Nobel Laureates in Chemistry Michael Levitt, Roger Kornberg, and Ada Yonath. == Technology == The company uses artificial intelligence, machine learning and natural language processing in order to extract experimentation data from scientific articles, such as the products that researchers used, the companies that supply the products, the protocol conditions that researchers selected, and the types of experiments and techniques. The algorithm ranks products based on how frequently they were used by researchers in their experiments, how recently a product was used, and the impact factor of the journal. The algorithm's output is a Bioz stars score for each product that was mentioned in an article. Bioz is a data-driven platform for product recommendations, which is contrary to platforms such as TripAdvisor and OpenTable that are based on user-generated reviews and ratings. The recommendations and scoring system that the company has developed are meant to assist researchers with the process of developing future medications and finding cures for diseases. They are guided towards products and techniques that were previously used by other researchers when planning and performing experiments. The company's revenue is based on selling SaaS subscriptions to researchers in biopharma companies. They also charge product suppliers for content syndication.

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