Plinian Core is a set of vocabulary terms that can be used to describe different aspects of biological species information. Under "biological species Information" all kinds of properties or traits related to taxa—biological and non-biological—are included. Thus, for instance, terms pertaining descriptions, legal aspects, conservation, management, demographics, nomenclature, or related resources are incorporated. == Description == The Plinian Core is aimed to facilitate the exchange of information about the species and upper taxa. What is in scope? Species level catalogs of any kind of biological objects or data. Terminology associated with biological collection data. Striving for compatibility with other biodiversity-related standards. Facilitating the addition of components and attributes of biological data. What is not in scope? Data interchange protocols. Non-biodiversity-related data. Occurrence level data. This standard is named after Pliny the Elder, a very influential figure in the study of the biological species. Plinian Core design requirements includes: ease of use, to be self-contained, able to support data integration from multiple databases, and ability to handle different levels of granularity. Core terms can be grouped in its current version as follows: Metadata Base Elements Record Metadata Nomenclature and Classification Taxonomic description Natural history Invasive species Habitat and Distribution Demography and Threats Uses, Management and Conservation associatedParty, MeasurementOrFact, References, AncillaryData == Background == Plinian Core started as a collaborative project between Instituto Nacional de Biodiversidad and GBIF Spain in 2005. A series of iterations in which elements were defined and implanted in different projects resulted in a "Plinian Core Flat" [deprecated]. As a result, a new development was impulse to overcome them in 2012. New formal requirements, additional input and a will to better support the standard and its documentation, as well as to align it with the processes of TDWG, the world reference body for biodiversity information standards. A new version, Plinian Core v3.x.x was defined. This provides more flexibility to fully represent the information of a species in a variety of scenarios. New elements to deal with aspects such as IPR, related resources, referenced, etc. were introduced, and elements already included were better-defined and documented. Partner for the development of Plinian Core in this new phase incorporated the University of Granada (UG, Spain), the Alexander von Humboldt Institute (IAvH, Colombia), the National Commission for the Knowledge and Use of Biodiversity (Conabio, Mexico) and the University of São Paulo (USP, Brazil). A "Plinian Core Task Group" within TDWG "Interest Group on species Information" was constituted and currently working on its development. == Levels of the standard == Plinian Core is presented in to levels: the abstract model and the application profiles. The abstract model (AM), comprising the abstract model schema(xsd) and the terms' URIs, is the normative part. It is all comprehensive, and allows for different levels of granularity in describing species properties. The AM should be taken as a "menu" from which to choose terms and level of detail needed in any specific project. The subsets of the abstract model intended to be implemented in specific projects are the "application profiles" (APs). Besides containing part of the elements of the AM, APs can impose additional specifications on the included elements, such as controlled vocabularies. Some examples of APs in use follow: Application profile CONABIO Application profile INBIO Application profile GBIF.ES Application profile Banco de Datos de la Naturaleza.Spain Application profile SIB-COLOMBIA == Relation to other standards == Plinian incorporates a number of elements already defined by other standards. The following table summarizes these standards and the elements used in Plinian Core:
Digital on-screen graphic
A digital on-screen graphic, digitally originated graphic (DOG, bug, network bug, on-screen bug or screenbug) is a watermark-like station logo that most television broadcasters overlay over a portion of the screen area of their programs to identify the channel. They are thus a form of permanent visual station identification, increasing brand recognition and asserting ownership of the video signal. The graphic identifies the source of programming, even if it has been time-shifted or recorded. Many of these technologies allow viewers to skip or omit traditional between-programming station identification; thus the use of a DOG enables the station or network to enforce brand identification even when standard commercials are skipped. DOG watermarking helps to reduce off-the-air copyright infringement—for example, the distribution of a current series' episodes on DVD: the watermarked content is easily differentiated from "official" DVD releases, and can help identify not only the station from which the broadcast was captured, but usually the actual date of the broadcast as well. Graphics may be used to identify if the correct subscription is being used for a type of venue. For example, showing Sky Sports within a pub in the United Kingdom requires a more expensive subscription; a channel authorized under this subscription adds a pint glass graphic to the bottom of the screen for inspectors to see. The graphic changes at certain times, making it harder to counterfeit. On the other hand, watermarks pollute the picture, distract viewers' attention and may cover an important piece of information presented in the television program. Extremely bright watermarks may cause screen burn-in or image persistence on some types of television sets such as the now mostly discontinued and rarely used plasma and CRT displays, and currently commonly used OLED and LCD displays. Usage of visually perceptible embedded watermarks requires the program author to have a separate clean copy for archival purposes, but this practice was not common decades ago when watermarking became popular among broadcasters. Watermarks present an issue when archival videos are used for a documentary that strives to create a coherent story. In some cases, watermarks are blurred or digitally removed if possible to clean up the picture. In the absence of visually perceptible watermarks, content control can be ensured with visually imperceptible digital watermarks. In some cases, the graphic also shows the name of the current program. Some television networks may place additional logos or text alongside their DOG to advertise significant upcoming programs. For example, broadcasters of the Olympic Games (most notably United States broadcaster NBC) often add the Olympic rings to their DOG for a period of time leading up to and during the Games. == Usage == == Connections with sponsor tags == Another graphic on television usually connected with sports (particularly in North America, though not in Europe) is the sponsor tag. It shows the logos of certain sponsors, accompanied by some background relevant to the game, the network logo, announcement and music of some kind. == Usage in ham radio and television == In most countries, the ham station is required to periodically identify their amateur-television transmission. Such stations frequently overlay their callsign on the signal instead of placing a card in the background. Most hams use homebuilt devices or old consumer character generators to generate such identifications rather than using graphical superimposes of high cost to do so. Only rarely one can see real graphics, as the callsign is usually written in the "OSD font". == Live DOGs by hobbyists == One of the easiest and most sought-after devices used to generate DOGs by hobbyists is the 1980s vintage Sony XV-T500 video superimposer. This device can luma-key a signal, capture a still frame into memory and then overlay the keyed graphic in one of eight colors onto any CVBS signal. Another method commonly used by hobbyists and even low-budgeted television stations was Amiga computers with genlock interfaces.
Margaret Mitchell (scientist)
Margaret Mitchell is a computer scientist who works on algorithmic bias and fairness in machine learning. She is most well known for her work on automatically removing undesired biases concerning demographic groups from machine learning models, as well as more transparent reporting of their intended use. == Education == Mitchell obtained a bachelor's degree in linguistics from Reed College, Portland, Oregon, in 2005. After having worked as a research assistant at the OGI School of Science and Engineering for two years, she subsequently obtained a Master's in Computational Linguistics from the University of Washington in 2009. She enrolled in a PhD program at the University of Aberdeen, where she wrote a doctoral thesis on the topic of Generating Reference to Visible Objects, graduating in 2013. == Career and research == Mitchell is best known for her work on fairness in machine learning and methods for mitigating algorithmic bias. This includes her work on introducing the concept of 'Model Cards' for more transparent model reporting, and methods for debiasing machine learning models using adversarial learning. Margaret Mitchell created the framework for recognizing and avoiding biases by testing with a variable for the group of interest, predictor and an adversary. In 2012, Mitchell joined the Human Language Technology Center of Excellence at Johns Hopkins University as a postdoctoral researcher, before taking up a position at Microsoft Research in 2013. At Microsoft, Mitchell was the research lead of the Seeing AI project, an app that offers support for the visually impaired by narrating texts and images. In November 2016, she became a senior research scientist at Google Research and Machine intelligence. While at Google, she founded and co-led the Ethical Artificial Intelligence team together with Timnit Gebru. In May 2018, she represented Google in the Partnership on AI. In February 2018, she gave a TED talk on "How we can build AI to help humans, not hurt us". In January 2021, after Timnit Gebru's termination from Google, Mitchell reportedly used a script to search through her corporate account and download emails that allegedly documented discriminatory incidents involving Gebru. An automated system locked Mitchell's account in response. In response to media attention Google claimed that she "exfiltrated thousands of files and shared them with multiple external accounts". After a five-week investigation, Mitchell was fired. Prior to her dismissal, Mitchell had been a vocal advocate for diversity at Google, and had voiced concerns about research censorship at the company. In late 2021, she joined AI start-up Hugging Face. Mitchell is a co-founder of Widening NLP, a special interest group within the Association for Computational Linguistics (ACL) seeking to increase the proportion of women and minorities working in natural language processing; and Computational Linguistics and Clinical Psychology, an annual workshop within the ACL that brings together clinicians and computational linguists to advance the state of the art in clinical psychology.
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Rayid Ghani
Rayid Ghani (born 1977) is a Distinguished Career Professor in the Machine Learning Department (in the School of Computer Science) and the Heinz College of Information Systems and Public Policy at Carnegie Mellon University. Previously, he was the director of the Center for Data Science and Public Policy, research associate professor in the department of computer science, and a senior fellow at the Harris School of Public Policy at the University of Chicago. He was also the co-founder of Edgeflip, an analytics startup that grew out of the Obama 2012 Campaign, focused on social media products for non-profits, advocacy groups, and charities. In September 2019, it was announced that he will be leaving the University of Chicago and joining Carnegie Mellon University's School of Computer Science and Heinz College of Information Systems and Public Policy. Prior to that, Rayid was the Chief Scientist of the Obama 2012 Election Campaign and focused on using data science, machine learning, and technology to improve fundraising, volunteer mobilization, voter registration, persuasion, and turnout. Ghani started and runs the Eric & Wendy Schmidt Data Science for Social Good Summer Fellowship. He's also the co-founder of Coleridge Initiative, a nonprofit organization working with governments to ensure that data and evidence is used more effectively for policymaking. == Education and career == Ghani completed his schooling at the Karachi Grammar School, in Karachi, Pakistan. Ghani completed his graduate studies in the machine learning department at Carnegie Mellon University with Tom M. Mitchell on machine learning and text classification and received his undergraduate degrees in computer science and mathematics from University of the South. Before his role at the University of Chicago, he was the chief scientist of the Obama 2012 Campaign. Before that, he was a senior research scientist and director of analytics research at Accenture Labs, where he led a technology research team focused on applied R&D in analytics, machine learning, and data mining for large-scale and emerging business problems. == Policy efforts == Ghani has been actively working with government agencies and non-profits on designing AI and Machine Learning Systems to help tackle societal problems in public health, criminal justice, social services, education, economic development, and workforce development He has also testified in front of the US Senate in 2023 and the US House of Representatives in 2020, on AI Governance and Regulation. == Research contributions == Ghani's research focuses on developing and applying machine learning, data science, and artificial intelligence methods to large-scale social problems in areas such as education, healthcare, economic development, criminal justice, energy, transportation, and public safety. His work has previously focused on text analytics, fundraising, volunteer, and voter mobilization using analytics, social media, and machine learning., and data mining. Rayid's research contributions have been in the areas of text mining, co-training, active learning, consumer behavior modeling, and fraud detection. His research focus has been on 1) dealing with bias and fairness issues in machine learning and AI, 2) designing Human-AI collaborative systems that support people in making decisions, and 3) evaluating AI systems to focus on the entire workflow and outcomes He has given keynote speeches on Analytics and the Presidential Elections (for example at Predictive Analytics World, Digital Leaders Forum, Carnegie Mellon University, and CeBIT Australia), on Business Applications of Data Mining, and Data Science for Social Good. == Selected publications == Big Data and Social Science: A Practical Guide to Methods and Tools. Editors: Ian Foster, Rayid Ghani, Ron Jarmin, Frauke Kreuter, Julia Lane. CRC Press 2016. Empirical observation of negligible fairness–accuracy trade-offs in machine learning for public policy. Kit Rodolfa, Hemank Lamba, Rayid Ghani. Nature Machine Intelligence 2021. Explainable machine learning for public policy: Use cases, gaps, and research directions. Kasun Amarasinghe, Kit T. Rodolfa, Hemank Lamba, Rayid Ghani. Data and Policy 2023. Data Mining for Business Applications. Editors: Carlos Soares, Rayid Ghani. Book. IOS Press 2010. Mining the Web to Add Semantics to Retail Data Mining. R. Ghani. Invited Paper. Web Mining: From Web to Semantic Web. Springer Lecture Notes in Artificial Intelligence, Vol. 3209. Berendt, B.; Hotho, A.; Mladenic, D.; van Someren, M.; Spiliopoulou, M.; Stumme, G. (Eds.) 2004
Topological deep learning
Topological deep learning (TDL) is a research field that extends deep learning to handle complex, non-Euclidean data structures. Traditional deep learning models, such as convolutional neural networks (CNNs) and recurrent neural networks (RNNs), excel in processing data on regular grids and sequences. However, scientific and real-world data often exhibit more intricate data domains encountered in scientific computations, including point clouds, meshes, time series, scalar fields graphs, or general topological spaces like simplicial complexes and CW complexes. TDL addresses this by incorporating topological concepts to process data with higher-order relationships, such as interactions among multiple entities and complex hierarchies. This approach leverages structures like simplicial complexes and hypergraphs to capture global dependencies and qualitative spatial properties, offering a more nuanced representation of data. TDL also encompasses methods from computational and algebraic topology that permit studying properties of neural networks and their training process, such as their predictive performance or generalization properties. The mathematical foundations of TDL are algebraic topology, differential topology, and geometric topology. Therefore, TDL can be generalized for data on differentiable manifolds, knots, links, tangles, curves, etc. == History and motivation == Traditional techniques from deep learning often operate under the assumption that a dataset is residing in a highly-structured space (like images, where convolutional neural networks exhibit outstanding performance over alternative methods) or a Euclidean space. The prevalence of new types of data, in particular graphs, meshes, and molecules, resulted in the development of new techniques, culminating in the field of geometric deep learning, which originally proposed a signal-processing perspective for treating such data types. While originally confined to graphs, where connectivity is defined based on nodes and edges, follow-up work extended concepts to a larger variety of data types, including simplicial complexes and CW complexes, with recent work proposing a unified perspective of message-passing on general combinatorial complexes. An independent perspective on different types of data originated from topological data analysis, which proposed a new framework for describing structural information of data, i.e., their "shape," that is inherently aware of multiple scales in data, ranging from local information to global information. While at first restricted to smaller datasets, subsequent work developed new descriptors that efficiently summarized topological information of datasets to make them available for traditional machine-learning techniques, such as support vector machines or random forests. Such descriptors ranged from new techniques for feature engineering over new ways of providing suitable coordinates for topological descriptors, or the creation of more efficient dissimilarity measures. Contemporary research in this field is largely concerned with either integrating information about the underlying data topology into existing deep-learning models or obtaining novel ways of training on topological domains. == Learning on topological spaces == One of the core concepts in topological deep learning is considering the domain upon which this data is defined and supported. In case of Euclidean data, such as images, this domain is a grid, upon which the pixel value of the image is supported. In a more general setting this domain might be a topological domain. Studying and developing deep learning models that are supported ln topological domains constitute the essence of topological deep learning. Next, we introduce the most common topological domains that are encountered in a deep learning setting. These domains include, but not limited to, graphs, simplicial complexes, cell complexes, combinatorial complexes and hypergraphs. Given a finite set S of abstract entities, a neighborhood function N {\displaystyle {\mathcal {N}}} on S is an assignment that attach to every point x {\displaystyle x} in S a subset of S or a relation. Such a function can be induced by equipping S with an auxiliary structure. Edges provide one way of defining relations among the entities of S. More specifically, edges in a graph allow one to define the notion of neighborhood using, for instance, the one hop neighborhood notion. Edges however, limited in their modeling capacity as they can only be used to model binary relations among entities of S since every edge is connected typically to two entities. In many applications, it is desirable to permit relations that incorporate more than two entities. The idea of using relations that involve more than two entities is central to topological domains. Such higher-order relations allow for a broader range of neighborhood functions to be defined on S to capture multi-way interactions among entities of S. Next we review the main properties, advantages, and disadvantages of some commonly studied topological domains in the context of deep learning, including (abstract) simplicial complexes, regular cell complexes, hypergraphs, and combinatorial complexes. ==== Comparisons among topological domains ==== Each of the enumerated topological domains has its own characteristics, advantages, and limitations: Simplicial complexes Simplest form of higher-order domains. Extensions of graph-based models. Admit hierarchical structures, making them suitable for various applications. Hodge theory can be naturally defined on simplicial complexes. Require relations to be subsets of larger relations, imposing constraints on the structure. Cell Complexes Generalize simplicial complexes. Provide more flexibility in defining higher-order relations. Each cell in a cell complex is homeomorphic to an open ball, attached together via attaching maps. Boundary cells of each cell in a cell complex are also cells in the complex. Represented combinatorially via incidence matrices. Hypergraphs Allow arbitrary set-type relations among entities. Relations are not imposed by other relations, providing more flexibility. Do not explicitly encode the dimension of cells or relations. Useful when relations in the data do not adhere to constraints imposed by other models like simplicial and cell complexes. Combinatorial Complexes : Generalize and bridge the gaps between simplicial complexes, cell complexes, and hypergraphs. Allow for hierarchical structures and set-type relations. Combine features of other complexes while providing more flexibility in modeling relations. Can be represented combinatorially, similar to cell complexes. ==== Hierarchical structure and set-type relations ==== The properties of simplicial complexes, cell complexes, and hypergraphs give rise to two main features of relations on higher-order domains, namely hierarchies of relations and set-type relations. ===== Rank function ===== A rank function on a higher-order domain X is an order-preserving function rk: X → Z, where rk(x) attaches a non-negative integer value to each relation x in X, preserving set inclusion in X. Cell and simplicial complexes are common examples of higher-order domains equipped with rank functions and therefore with hierarchies of relations. ===== Set-type relations ===== Relations in a higher-order domain are called set-type relations if the existence of a relation is not implied by another relation in the domain. Hypergraphs constitute examples of higher-order domains equipped with set-type relations. Given the modeling limitations of simplicial complexes, cell complexes, and hypergraphs, we develop the combinatorial complex, a higher-order domain that features both hierarchies of relations and set-type relations. The learning tasks in TDL can be broadly classified into three categories: Cell classification: Predict targets for each cell in a complex. Examples include triangular mesh segmentation, where the task is to predict the class of each face or edge in a given mesh. Complex classification: Predict targets for an entire complex. For example, predict the class of each input mesh. Cell prediction: Predict properties of cell-cell interactions in a complex, and in some cases, predict whether a cell exists in the complex. An example is the prediction of linkages among entities in hyperedges of a hypergraph. In practice, to perform the aforementioned tasks, deep learning models designed for specific topological spaces must be constructed and implemented. These models, known as topological neural networks, are tailored to operate effectively within these spaces. === Topological neural networks === Central to TDL are topological neural networks (TNNs), specialized architectures designed to operate on data structured in topological domains. Unlike traditional neural networks tailored for grid-like structures, TNNs are adept at handling more intricate data representations, such as graphs
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